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The map label for this gene is xerD [H]

Identifier: 13476425

GI number: 13476425

Start: 6411879

End: 6412958

Strand: Direct

Name: xerD [H]

Synonym: mlr7741

Alternate gene names: 13476425

Gene position: 6411879-6412958 (Clockwise)

Preceding gene: 13476424

Following gene: 13476428

Centisome position: 91.13

GC content: 57.22

Gene sequence:

>1080_bases
GTGTGGTCAATAATGACAAACGAAACGATTCAAGAGGGGTATCCCTCTGATCATTTTGCTGTGTTCTCTTCTCAAAATTC
GAAGTTTAAATATACGTACAACAAGATCCGAGAAGTAACGTCGCATAGGGTTGGAGAGCTTTTTCTAGCGTATCGAGATA
TATTGTGGGATGATGGGCGGCATAAATACAATGTCAGCTCTTTTATCGGCGAAATAGACGAGATCCTCCTCGGGGAGCGT
TTCAGCGCCTTTGACCAGAGTACCCTTGATAACCTTATCGGCACCTTGCGCCAGCGCGGCAACAGCAACGCAACCATCAA
TCGAAAGATGGCTGCCCTCAGCAAACTGCTGCGCAAGGCTCACAAGATGGGGGATATCCACAGCCTGCCCGAGTTCCGCC
GCCAGAAGGAGCGGGCGGGACGGATTCGTTTCCTCGAGAGGGACGAAGAGGCAAGGCTGTTCGCCGCCATCAGGGGCCGC
AGCGAGGATGCCTACAGGCTTTCCGTCTTCCTTGTCGATAGCGGCTGCCGTCTTGGCGAAGCCCTCGGTTTGATCTGGAA
CGACATCCAGGAACATCGCGTCTCCTTCTGGATCACCAAATCCGGCCGCAGCCGCACCATTCCGATGACCGAGCGGGTCA
AGGAGGTCATCAAGCTGCCTCCCACCGAGGGCCGCCGGCCCAAAGGTCCGTTCACCAAGCTCAGCCAGGCGCAATATCGT
GCCATCTGGAACGACGCGAAGGCTGAAGTCGGTCTTGGCGCCGACGATCAGGTGGTCCCGCACATATTGCGCCACACCTG
TGCCTCGCGTCTTGTCCAGGGCGGCATCGACATCAGGCGCGTGCAGATGTGGCTCGGTCATCAGACCTTGTCGATGACCA
TGCGCTATGCGCATCTGGCCACCAATGATCTCGACGGCTGTGTCACCGTGCTCGAGACGCCTCGGGGGTGCGGAGCGGCC
AATGGCATTGAAAACTCTGCATTCTCGTCGCCGCTGACCACGCCTTCGGCCTCGAAGCCGGCGCGCAAGCCGAAGAGCGA
AGCGGTAAAGGCCCAAGGTAAAGGCTCCAAGGCAAACTAG

Upstream 100 bases:

>100_bases
GATTTCGTGGGATTCGCCGTCAGGTGGATGAAATTGTTTGTCGGACAAAAACTCTTGAAAGGACGCTTCCAAGTGGCTAG
GTCTGACCATCCACTCGGGG

Downstream 100 bases:

>100_bases
CTCCGCGCCGAGCTTGCCAATTGGCCGCGTGAGTCGGCGCTCCTGCTGGCGGCATCCTTTCCTCTATAGTGTTGGGGAGA
GGGGCGCTCTCATCGCCGGT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MWSIMTNETIQEGYPSDHFAVFSSQNSKFKYTYNKIREVTSHRVGELFLAYRDILWDDGRHKYNVSSFIGEIDEILLGER
FSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLPEFRRQKERAGRIRFLERDEEARLFAAIRGR
SEDAYRLSVFLVDSGCRLGEALGLIWNDIQEHRVSFWITKSGRSRTIPMTERVKEVIKLPPTEGRRPKGPFTKLSQAQYR
AIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDLDGCVTVLETPRGCGAA
NGIENSAFSSPLTTPSASKPARKPKSEAVKAQGKGSKAN

Sequences:

>Translated_359_residues
MWSIMTNETIQEGYPSDHFAVFSSQNSKFKYTYNKIREVTSHRVGELFLAYRDILWDDGRHKYNVSSFIGEIDEILLGER
FSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLPEFRRQKERAGRIRFLERDEEARLFAAIRGR
SEDAYRLSVFLVDSGCRLGEALGLIWNDIQEHRVSFWITKSGRSRTIPMTERVKEVIKLPPTEGRRPKGPFTKLSQAQYR
AIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDLDGCVTVLETPRGCGAA
NGIENSAFSSPLTTPSASKPARKPKSEAVKAQGKGSKAN
>Mature_359_residues
MWSIMTNETIQEGYPSDHFAVFSSQNSKFKYTYNKIREVTSHRVGELFLAYRDILWDDGRHKYNVSSFIGEIDEILLGER
FSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLPEFRRQKERAGRIRFLERDEEARLFAAIRGR
SEDAYRLSVFLVDSGCRLGEALGLIWNDIQEHRVSFWITKSGRSRTIPMTERVKEVIKLPPTEGRRPKGPFTKLSQAQYR
AIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDLDGCVTVLETPRGCGAA
NGIENSAFSSPLTTPSASKPARKPKSEAVKAQGKGSKAN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40494; Mature: 40494

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSIMTNETIQEGYPSDHFAVFSSQNSKFKYTYNKIREVTSHRVGELFLAYRDILWDDGR
CCCCCCCCHHHHCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HKYNVSSFIGEIDEILLGERFSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKA
CEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
HKMGDIHSLPEFRRQKERAGRIRFLERDEEARLFAAIRGRSEDAYRLSVFLVDSGCRLGE
HHCCCHHCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHH
ALGLIWNDIQEHRVSFWITKSGRSRTIPMTERVKEVIKLPPTEGRRPKGPFTKLSQAQYR
HHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TNDLDGCVTVLETPRGCGAANGIENSAFSSPLTTPSASKPARKPKSEAVKAQGKGSKAN
CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MWSIMTNETIQEGYPSDHFAVFSSQNSKFKYTYNKIREVTSHRVGELFLAYRDILWDDGR
CCCCCCCCHHHHCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HKYNVSSFIGEIDEILLGERFSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKA
CEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
HKMGDIHSLPEFRRQKERAGRIRFLERDEEARLFAAIRGRSEDAYRLSVFLVDSGCRLGE
HHCCCHHCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHH
ALGLIWNDIQEHRVSFWITKSGRSRTIPMTERVKEVIKLPPTEGRRPKGPFTKLSQAQYR
HHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TNDLDGCVTVLETPRGCGAANGIENSAFSSPLTTPSASKPARKPKSEAVKAQGKGSKAN
CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]