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The map label for this gene is rbsB [H]

Identifier: 13476369

GI number: 13476369

Start: 6348689

End: 6349630

Strand: Reverse

Name: rbsB [H]

Synonym: mll7668

Alternate gene names: 13476369

Gene position: 6349630-6348689 (Counterclockwise)

Preceding gene: 13476370

Following gene: 13476368

Centisome position: 90.24

GC content: 60.08

Gene sequence:

>942_bases
ATGCGTCTTATCAAGATCCTTTCAGGCTGCGCCGCAGCCATCGCCATGACCCTCGCGCTTGGCTCCGCCTCGGCCATGGC
CGAAACCTATGCGCTGGTCACCATCAACCAGCAGGCCCTGTTTTTCAACCAGATCAATGACGGCGCCAAGGCCGCGGCAA
AGGCCGCCGGCGTCGACCTCGTCATCTTCAACGCCAACAATGTGCCGAGCGCGCAAAACGACGCGATCGAGAACTACATC
ACCCAGAAGGTCGACGGCATCATTCTCGTCGCCATCGATGTCAACGGCGTGAAGCCCGCGATCACCGCTGCCAAGGCCGC
CGGTATTCCGGTGATTGCCATCGACGCGCAGATTCCGAATGGCGACAATGTCGCCTTCGTCGGCGTCGACAACACCAAGG
CTGGCGAGGATATCGGCAAATTCTACGCCGAATACGTCAAGACCAAGCTGAACGGAACCGCCAAGATCGGCGTTGTCGGC
GCGCTCAATTCGTTCATCCAGAACCAGCGCCTGGACGGCTTCAAGAAGGCTGTCACCGAGAGCGGCCAGAAGGTGACTTT
CCTCGACACGGTCGATGGCCAGAACGTACAGGACGTGGCGCTGTCGGCCTCCGAAAACCTGATGACGGCCAATGCCGACA
TGACGACGCTTTATGCGACCGGCGAGCCGGCCTTGCTCGGCGCCGTTTCGGCCGTCACCAGCCAGGGCCGTACCGGCGAC
GTCAAGGTGTTTGGCTGGGACCTGACCAAGTCCGCGGTGCAAGGCCTCGAAGAGGGCTGGGTAATCGCCGTCGTCCAGCA
GGATCCGGCCGGTGAAGGCAAGGCTGCCATCGAAGCCTTCGGCAAGCTCAAGAAGGGCGAGAAGATCGATCCGATCATCA
ATGTTCCGATCACCATCGTGACCAAGGAAAATGTCGGCCAGTTCAAGGACATGTTCAAGTAA

Upstream 100 bases:

>100_bases
GTCACTTGACAAGAAATCAAGTATCTTGAATTATGCATCTGCGCTCAGCGCCAGATGAGCCCGATCAAGGGCCTTTTCCG
CAAAACCAAGGGGAACCGGA

Downstream 100 bases:

>100_bases
GATCCTCCCCAGACCGCCGGGCCGCGCATCGACTTAGTGGTCGTTGCGCAGCCCGGCGACCGATTGAATATGCCGCATTG
AGAACTGGAACCATGATGAG

Product: ABC transporter, binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRLIKILSGCAAAIAMTLALGSASAMAETYALVTINQQALFFNQINDGAKAAAKAAGVDLVIFNANNVPSAQNDAIENYI
TQKVDGIILVAIDVNGVKPAITAAKAAGIPVIAIDAQIPNGDNVAFVGVDNTKAGEDIGKFYAEYVKTKLNGTAKIGVVG
ALNSFIQNQRLDGFKKAVTESGQKVTFLDTVDGQNVQDVALSASENLMTANADMTTLYATGEPALLGAVSAVTSQGRTGD
VKVFGWDLTKSAVQGLEEGWVIAVVQQDPAGEGKAAIEAFGKLKKGEKIDPIINVPITIVTKENVGQFKDMFK

Sequences:

>Translated_313_residues
MRLIKILSGCAAAIAMTLALGSASAMAETYALVTINQQALFFNQINDGAKAAAKAAGVDLVIFNANNVPSAQNDAIENYI
TQKVDGIILVAIDVNGVKPAITAAKAAGIPVIAIDAQIPNGDNVAFVGVDNTKAGEDIGKFYAEYVKTKLNGTAKIGVVG
ALNSFIQNQRLDGFKKAVTESGQKVTFLDTVDGQNVQDVALSASENLMTANADMTTLYATGEPALLGAVSAVTSQGRTGD
VKVFGWDLTKSAVQGLEEGWVIAVVQQDPAGEGKAAIEAFGKLKKGEKIDPIINVPITIVTKENVGQFKDMFK
>Mature_313_residues
MRLIKILSGCAAAIAMTLALGSASAMAETYALVTINQQALFFNQINDGAKAAAKAAGVDLVIFNANNVPSAQNDAIENYI
TQKVDGIILVAIDVNGVKPAITAAKAAGIPVIAIDAQIPNGDNVAFVGVDNTKAGEDIGKFYAEYVKTKLNGTAKIGVVG
ALNSFIQNQRLDGFKKAVTESGQKVTFLDTVDGQNVQDVALSASENLMTANADMTTLYATGEPALLGAVSAVTSQGRTGD
VKVFGWDLTKSAVQGLEEGWVIAVVQQDPAGEGKAAIEAFGKLKKGEKIDPIINVPITIVTKENVGQFKDMFK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=302, Percent_Identity=28.8079470198675, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788898, Length=279, Percent_Identity=29.3906810035842, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32636; Mature: 32636

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIKILSGCAAAIAMTLALGSASAMAETYALVTINQQALFFNQINDGAKAAAKAAGVDL
CHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECCCEEEEECCCCCHHHHHHHCCEEE
VIFNANNVPSAQNDAIENYITQKVDGIILVAIDVNGVKPAITAAKAAGIPVIAIDAQIPN
EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCC
GDNVAFVGVDNTKAGEDIGKFYAEYVKTKLNGTAKIGVVGALNSFIQNQRLDGFKKAVTE
CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHC
SGQKVTFLDTVDGQNVQDVALSASENLMTANADMTTLYATGEPALLGAVSAVTSQGRTGD
CCCEEEEEECCCCCCHHHHEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCC
VKVFGWDLTKSAVQGLEEGWVIAVVQQDPAGEGKAAIEAFGKLKKGEKIDPIINVPITIV
EEEEEECHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEECCEEEE
TKENVGQFKDMFK
ECCCCHHHHHHCC
>Mature Secondary Structure
MRLIKILSGCAAAIAMTLALGSASAMAETYALVTINQQALFFNQINDGAKAAAKAAGVDL
CHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECCCEEEEECCCCCHHHHHHHCCEEE
VIFNANNVPSAQNDAIENYITQKVDGIILVAIDVNGVKPAITAAKAAGIPVIAIDAQIPN
EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCC
GDNVAFVGVDNTKAGEDIGKFYAEYVKTKLNGTAKIGVVGALNSFIQNQRLDGFKKAVTE
CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHC
SGQKVTFLDTVDGQNVQDVALSASENLMTANADMTTLYATGEPALLGAVSAVTSQGRTGD
CCCEEEEEECCCCCCHHHHEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCC
VKVFGWDLTKSAVQGLEEGWVIAVVQQDPAGEGKAAIEAFGKLKKGEKIDPIINVPITIV
EEEEEECHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEECCEEEE
TKENVGQFKDMFK
ECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]