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The map label for this gene is rbsC [H]

Identifier: 13476367

GI number: 13476367

Start: 6346786

End: 6347799

Strand: Reverse

Name: rbsC [H]

Synonym: mll7665

Alternate gene names: 13476367

Gene position: 6347799-6346786 (Counterclockwise)

Preceding gene: 13476368

Following gene: 13476366

Centisome position: 90.22

GC content: 65.38

Gene sequence:

>1014_bases
ATGAACGTCACCTCCGCCGGTGTTGGCGCCTCGCAGCCCAAACGCGCCCACAACAGCACCTGGAAGGATGTGGCGACAGC
CAATGGCAGCGTCGTCTCCATCGCGCTGTTCTTCATCGTCGTCTGCGTGGTCTTCTCGCTGGTCACCGGTTCCTTCCTGA
CGACGCCCAATCTGCTCAACATCGTGCGCCAATCAGCGCCGCTGCTGATCGTTGCGGCGGCGATGACCTTCGTCATCACC
ACCGGAGGCATCGATCTTTCGGTGGGGTCCGTGCTGGCGCTGACGGCGACACTTTCGGCCGTTGCGCTGCAGGCCGGCCT
GCCATGGCCGCTGGTCGTTGTCGGCATGCTGGCGCTTGGCGCGGCGATCGGCGCCTTGCAGGGTTTCTTCATCGCCTATG
AGCGCATCCCGGCCTTTATCGTCACGCTTGCCGGGCTCTCGGTCATCCGCGGCGTGGCACTGCTGATCACCGGCGGCTAT
TCGATCCCGGTCGAGCCGACGAGCTTCTTCGTCAACATCGGCAGGGCCTGGTTCCTCGGTGTGCCGGTACCCGCATTGCT
CGCCCTTGTCGTCCTGGCCATCGCCTATCTCGCCTTCAACCAGACGCCGTTCGGCCGCTATGTGACCGGCATCGGGGCCA
ACGCCGAGGCTGTGCGCCGCGCCGGTGTCGATACGCGCTTCATGACACTCTTCGTCTATGTCCTGTCGGGCATGGCGGCA
GCGTCGGCCGGTGTCATTCTGGCCGCGCGGCTGGGCTCCGGCTCGTCCAATTCCGGCCAGGGTTTCGAGCTCGATGTCAT
CGCCGCCGTGGTGCTTGGCGGCACCAGCCTGTTCGGCGGGCGCGGTACGATCATCGGCACCGTGCTCGGCGCATTGACCG
TCGCGGTCATCGGCAACGGCCTGATCCTGGCGCACATGTCGCCCTTCCTGACGCCGATCGTCACCGGCACTATCATCCTC
GTTGCCATCTGGCTGAATTTCCGCCTGTTCAAGGGCGCGACGCGGAGCCGCTGA

Upstream 100 bases:

>100_bases
GGATCGGCGACACCAGCATCGAGGAGGTCGTCAACCTGATCGTCGGCCGGAAATTCACCGCGCGTTCGGCACGCGCCAGC
CGCGACGAGGGGGTACAGCC

Downstream 100 bases:

>100_bases
CATGGATCATTTGTTCGACAACAGGCCAAGGCAAAGAGTGCCGATCGGTGTTCGCTCCGGGACCGTGATGACCGTTACCG
GCCCGGTCGCGATCGCCGAC

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNVTSAGVGASQPKRAHNSTWKDVATANGSVVSIALFFIVVCVVFSLVTGSFLTTPNLLNIVRQSAPLLIVAAAMTFVIT
TGGIDLSVGSVLALTATLSAVALQAGLPWPLVVVGMLALGAAIGALQGFFIAYERIPAFIVTLAGLSVIRGVALLITGGY
SIPVEPTSFFVNIGRAWFLGVPVPALLALVVLAIAYLAFNQTPFGRYVTGIGANAEAVRRAGVDTRFMTLFVYVLSGMAA
ASAGVILAARLGSGSSNSGQGFELDVIAAVVLGGTSLFGGRGTIIGTVLGALTVAVIGNGLILAHMSPFLTPIVTGTIIL
VAIWLNFRLFKGATRSR

Sequences:

>Translated_337_residues
MNVTSAGVGASQPKRAHNSTWKDVATANGSVVSIALFFIVVCVVFSLVTGSFLTTPNLLNIVRQSAPLLIVAAAMTFVIT
TGGIDLSVGSVLALTATLSAVALQAGLPWPLVVVGMLALGAAIGALQGFFIAYERIPAFIVTLAGLSVIRGVALLITGGY
SIPVEPTSFFVNIGRAWFLGVPVPALLALVVLAIAYLAFNQTPFGRYVTGIGANAEAVRRAGVDTRFMTLFVYVLSGMAA
ASAGVILAARLGSGSSNSGQGFELDVIAAVVLGGTSLFGGRGTIIGTVLGALTVAVIGNGLILAHMSPFLTPIVTGTIIL
VAIWLNFRLFKGATRSR
>Mature_337_residues
MNVTSAGVGASQPKRAHNSTWKDVATANGSVVSIALFFIVVCVVFSLVTGSFLTTPNLLNIVRQSAPLLIVAAAMTFVIT
TGGIDLSVGSVLALTATLSAVALQAGLPWPLVVVGMLALGAAIGALQGFFIAYERIPAFIVTLAGLSVIRGVALLITGGY
SIPVEPTSFFVNIGRAWFLGVPVPALLALVVLAIAYLAFNQTPFGRYVTGIGANAEAVRRAGVDTRFMTLFVYVLSGMAA
ASAGVILAARLGSGSSNSGQGFELDVIAAVVLGGTSLFGGRGTIIGTVLGALTVAVIGNGLILAHMSPFLTPIVTGTIIL
VAIWLNFRLFKGATRSR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=38.8349514563107, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1790191, Length=297, Percent_Identity=41.0774410774411, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789992, Length=371, Percent_Identity=33.6927223719677, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI145693152, Length=335, Percent_Identity=36.1194029850746, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1790524, Length=290, Percent_Identity=35.5172413793103, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI87082395, Length=290, Percent_Identity=38.2758620689655, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI145693214, Length=268, Percent_Identity=36.5671641791045, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1787794, Length=262, Percent_Identity=34.3511450381679, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=32.8671328671329, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788471, Length=284, Percent_Identity=34.1549295774648, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34506; Mature: 34506

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTSAGVGASQPKRAHNSTWKDVATANGSVVSIALFFIVVCVVFSLVTGSFLTTPNLLN
CCCCCCCCCCCCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IVRQSAPLLIVAAAMTFVITTGGIDLSVGSVLALTATLSAVALQAGLPWPLVVVGMLALG
HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AAIGALQGFFIAYERIPAFIVTLAGLSVIRGVALLITGGYSIPVEPTSFFVNIGRAWFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHEECCCCEEEC
VPVPALLALVVLAIAYLAFNQTPFGRYVTGIGANAEAVRRAGVDTRFMTLFVYVLSGMAA
CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
ASAGVILAARLGSGSSNSGQGFELDVIAAVVLGGTSLFGGRGTIIGTVLGALTVAVIGNG
HCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
LILAHMSPFLTPIVTGTIILVAIWLNFRLFKGATRSR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNVTSAGVGASQPKRAHNSTWKDVATANGSVVSIALFFIVVCVVFSLVTGSFLTTPNLLN
CCCCCCCCCCCCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IVRQSAPLLIVAAAMTFVITTGGIDLSVGSVLALTATLSAVALQAGLPWPLVVVGMLALG
HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AAIGALQGFFIAYERIPAFIVTLAGLSVIRGVALLITGGYSIPVEPTSFFVNIGRAWFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHEECCCCEEEC
VPVPALLALVVLAIAYLAFNQTPFGRYVTGIGANAEAVRRAGVDTRFMTLFVYVLSGMAA
CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
ASAGVILAARLGSGSSNSGQGFELDVIAAVVLGGTSLFGGRGTIIGTVLGALTVAVIGNG
HCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
LILAHMSPFLTPIVTGTIILVAIWLNFRLFKGATRSR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]