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The map label for this gene is ygdK [C]

Identifier: 13476352

GI number: 13476352

Start: 6332279

End: 6332707

Strand: Reverse

Name: ygdK [C]

Synonym: mll7646

Alternate gene names: 13476352

Gene position: 6332707-6332279 (Counterclockwise)

Preceding gene: 13476353

Following gene: 13476349

Centisome position: 90.0

GC content: 63.17

Gene sequence:

>429_bases
ATGACGACCACGATCCAGACGATCCGCGACGACTTCTCCTTCCTTGACGAATGGGAGGACCGCTATCGCTACGTCATCGA
GCTCGGCGAGGCGCTGCCTCCCTTACCCGATAAGGAGCGCAACGCCGCCAACAAGGTGCCGGGTTGCGTCAGCCAGGTCT
GGCTGACCACCGAGCGGGGGCCAGGCAGCGATCCGGTCATCACGTTCACGGGGGATTCGGACGCTCATATCGTGCGCGGG
CTGGTCGCCATCATGCTGGCGCTGTTTTCCGGACGGACCGCCAGCGAAATCCAGAAAACCGATGCGGAAGCGACACTGAA
GGCACTCGGCCTGGATGAGCACCTGTCGCCACAGCGCGCCAATGGCCTTCGCTCGATGGTCAAGCGCATCAAGCGCGATG
CCGAGATGGCACTCAAGCAGACCGCCTGA

Upstream 100 bases:

>100_bases
GCCGTCTCGACGGCGCACCGCGGGCCGTCTGCCCTCTCGACGCCTGCGGTGTCCTTGTTTTTTCCGTGACGCGGGGCCGC
CGCGTGACTATATCCGGGTC

Downstream 100 bases:

>100_bases
CACCCTCCAGCCAGCCGGCAATCCTGTTCTCAAAATCAAACGGCGCCCGAAGGCGCCGTCGACGTCGGTTCGACCTGACG
GAACAGCGATTACCGCGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTTTIQTIRDDFSFLDEWEDRYRYVIELGEALPPLPDKERNAANKVPGCVSQVWLTTERGPGSDPVITFTGDSDAHIVRG
LVAIMLALFSGRTASEIQKTDAEATLKALGLDEHLSPQRANGLRSMVKRIKRDAEMALKQTA

Sequences:

>Translated_142_residues
MTTTIQTIRDDFSFLDEWEDRYRYVIELGEALPPLPDKERNAANKVPGCVSQVWLTTERGPGSDPVITFTGDSDAHIVRG
LVAIMLALFSGRTASEIQKTDAEATLKALGLDEHLSPQRANGLRSMVKRIKRDAEMALKQTA
>Mature_141_residues
TTTIQTIRDDFSFLDEWEDRYRYVIELGEALPPLPDKERNAANKVPGCVSQVWLTTERGPGSDPVITFTGDSDAHIVRGL
VAIMLALFSGRTASEIQKTDAEATLKALGLDEHLSPQRANGLRSMVKRIKRDAEMALKQTA

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=132, Percent_Identity=40.1515151515151, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787969, Length=116, Percent_Identity=37.9310344827586, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15744; Mature: 15613

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTIQTIRDDFSFLDEWEDRYRYVIELGEALPPLPDKERNAANKVPGCVSQVWLTTERG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCC
PGSDPVITFTGDSDAHIVRGLVAIMLALFSGRTASEIQKTDAEATLKALGLDEHLSPQRA
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHH
NGLRSMVKRIKRDAEMALKQTA
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTTIQTIRDDFSFLDEWEDRYRYVIELGEALPPLPDKERNAANKVPGCVSQVWLTTERG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCC
PGSDPVITFTGDSDAHIVRGLVAIMLALFSGRTASEIQKTDAEATLKALGLDEHLSPQRA
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHH
NGLRSMVKRIKRDAEMALKQTA
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]