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The map label for this gene is oppB [H]

Identifier: 13476312

GI number: 13476312

Start: 6288073

End: 6288996

Strand: Direct

Name: oppB [H]

Synonym: mlr7598

Alternate gene names: 13476312

Gene position: 6288073-6288996 (Clockwise)

Preceding gene: 13476311

Following gene: 13476313

Centisome position: 89.37

GC content: 63.2

Gene sequence:

>924_bases
ATGCTGCGATACGTATTCCGGCGGCTTTTGACCGCCATACCGACGCTGTTCGTCATCGTGACGATGGCGTTCTTCCTGAT
GCGCGTCGCGCCAGGCGGGCCATTCAACCAGGAGCGGGGGCTGAGCCCTGAGATCAGGGCCAACCTTGAAGCCCAGTTCG
GCCTCAACGATCCGCTCTGGCTGCAATATGTCCACTATCTCGGCAATCTCTTGCGCGGGAATTTCGGCCCAAGCTACAAC
ATGCCGGATTTCACCGTCACCGAACTGTTCGCCAAGGGCCTGCCCATTTCGGTGCAGCTCGGCGCTTCGGCGCTGATCCT
GGCGCTGCTGCTCGGTTCCGTGCTCGGCACCATTGCCGCGCTCAACCAGAACAAGCTTGGCGACTATACGGTGATTGCGC
TGGCGACGGCCGGCAGCACTATCCCGACCTTCGTCATTGCGCCGGTGATCCAGCTTCTCTTCGGGCTGACCTGGAAGCTC
CTGCCGATCGGCGGCTGGGGCGATGGCGCCTTCATCAACAAAGTCGGCCCGGTGCTGACGCTTGCCTTGCCGCAGATCGC
CATCGTCGCCCGCCTCATGCGCGGCTCGATGATCGAATCGCTGCGCTCCCACCACATCCGCACCGCCCGCGCGCTCGGCC
TTTCCGACTGGTCGGTGGTGGTCAAGCACGCCTTGCGCGGCGCCATCCTGCCGATCGTTTCGTTCACCGGCCCGGCGGCG
GCGGCCCTATTGACCGGCTCCGTCATCGTCGAGACGATCTTCTCCATTCCCGGCGTCGGCCGCTACTTCGTCGATGCGGC
GCTCAACCGCGACTACACGCTGGTGATGGGAACGGTGGTGGTGATCGCCATCTTCACCATCGTGTTCAATCTGATCGTCG
ACGTCATGTACGCAGTCGTCGACCCGAGGGTGCGCTATGACTGA

Upstream 100 bases:

>100_bases
GGAAACGCAATCGATTTTCGGAAAATCCGGTGCGAAGATTTGAAGGCTGGAGCACAATGGTCCAATCGGACAGGCGTGTT
CCGGATCAAGTGGGGCACCG

Downstream 100 bases:

>100_bases
CATCGCAGCCACTGCTCCCGCTATCGTCGGCCGCTCGCTATGGGGCGATGCCTGGGCGCGCCTCAAGGCCAACCGCGCCG
CCATGTTCAGCCTCTACTAC

Product: ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MLRYVFRRLLTAIPTLFVIVTMAFFLMRVAPGGPFNQERGLSPEIRANLEAQFGLNDPLWLQYVHYLGNLLRGNFGPSYN
MPDFTVTELFAKGLPISVQLGASALILALLLGSVLGTIAALNQNKLGDYTVIALATAGSTIPTFVIAPVIQLLFGLTWKL
LPIGGWGDGAFINKVGPVLTLALPQIAIVARLMRGSMIESLRSHHIRTARALGLSDWSVVVKHALRGAILPIVSFTGPAA
AALLTGSVIVETIFSIPGVGRYFVDAALNRDYTLVMGTVVVIAIFTIVFNLIVDVMYAVVDPRVRYD

Sequences:

>Translated_307_residues
MLRYVFRRLLTAIPTLFVIVTMAFFLMRVAPGGPFNQERGLSPEIRANLEAQFGLNDPLWLQYVHYLGNLLRGNFGPSYN
MPDFTVTELFAKGLPISVQLGASALILALLLGSVLGTIAALNQNKLGDYTVIALATAGSTIPTFVIAPVIQLLFGLTWKL
LPIGGWGDGAFINKVGPVLTLALPQIAIVARLMRGSMIESLRSHHIRTARALGLSDWSVVVKHALRGAILPIVSFTGPAA
AALLTGSVIVETIFSIPGVGRYFVDAALNRDYTLVMGTVVVIAIFTIVFNLIVDVMYAVVDPRVRYD
>Mature_307_residues
MLRYVFRRLLTAIPTLFVIVTMAFFLMRVAPGGPFNQERGLSPEIRANLEAQFGLNDPLWLQYVHYLGNLLRGNFGPSYN
MPDFTVTELFAKGLPISVQLGASALILALLLGSVLGTIAALNQNKLGDYTVIALATAGSTIPTFVIAPVIQLLFGLTWKL
LPIGGWGDGAFINKVGPVLTLALPQIAIVARLMRGSMIESLRSHHIRTARALGLSDWSVVVKHALRGAILPIVSFTGPAA
AALLTGSVIVETIFSIPGVGRYFVDAALNRDYTLVMGTVVVIAIFTIVFNLIVDVMYAVVDPRVRYD

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=50, Blast_Score=327, Evalue=8e-91,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=36.283185840708, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=34.0836012861736, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=34.8387096774194, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1788504, Length=360, Percent_Identity=27.2222222222222, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.2051282051282, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33221; Mature: 33221

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYVFRRLLTAIPTLFVIVTMAFFLMRVAPGGPFNQERGLSPEIRANLEAQFGLNDPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEECCCCCHHH
LQYVHYLGNLLRGNFGPSYNMPDFTVTELFAKGLPISVQLGASALILALLLGSVLGTIAA
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LNQNKLGDYTVIALATAGSTIPTFVIAPVIQLLFGLTWKLLPIGGWGDGAFINKVGPVLT
HCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHHH
LALPQIAIVARLMRGSMIESLRSHHIRTARALGLSDWSVVVKHALRGAILPIVSFTGPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH
AALLTGSVIVETIFSIPGVGRYFVDAALNRDYTLVMGTVVVIAIFTIVFNLIVDVMYAVV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPRVRYD
CCCCCCC
>Mature Secondary Structure
MLRYVFRRLLTAIPTLFVIVTMAFFLMRVAPGGPFNQERGLSPEIRANLEAQFGLNDPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEECCCCCHHH
LQYVHYLGNLLRGNFGPSYNMPDFTVTELFAKGLPISVQLGASALILALLLGSVLGTIAA
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LNQNKLGDYTVIALATAGSTIPTFVIAPVIQLLFGLTWKLLPIGGWGDGAFINKVGPVLT
HCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHHH
LALPQIAIVARLMRGSMIESLRSHHIRTARALGLSDWSVVVKHALRGAILPIVSFTGPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH
AALLTGSVIVETIFSIPGVGRYFVDAALNRDYTLVMGTVVVIAIFTIVFNLIVDVMYAVV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPRVRYD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]