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The map label for this gene is oppA [H]

Identifier: 13476311

GI number: 13476311

Start: 6286318

End: 6287910

Strand: Direct

Name: oppA [H]

Synonym: mlr7597

Alternate gene names: 13476311

Gene position: 6286318-6287910 (Clockwise)

Preceding gene: 13476308

Following gene: 13476312

Centisome position: 89.34

GC content: 60.58

Gene sequence:

>1593_bases
ATGCTGAAAAACATGCTGAAGGCGACGGTATTCGCCACCACCATGGCGGTAGCCGCCGGCGCATTCTACTCGCCGGCGTT
CGCCGAGAGCGTCTACAACAGGGGCACCGCCGCTGAATCGGAATCGGTCGACCCGCACAAGACCTCGACGGTCTATGAAG
CCAATGTGCTGCGCGACCTGTTCCAGGGACTGGTCATGCAGGACCAGAAGGCAAACCTCATTCCTGGCGCCGCCGAAAGC
TGGACGGTGTCGGATGACGGCACCGTCTACACCTTCAAGCTGCGCAAGGACGGCACGTGGTCTGACGGCAGCCCGGTGAC
GGCGGACGACTTCGTCTACGCCTTCCATCGGCTGGAGGACCCTGCGACCGGGGCCGAATACGCCTCGATGCTGTACCCGG
TGAAGGGTGCGGAGGATTTCAACACCAAGAAGGGCAAGCCTGAGGACATGGGCGTCAAGGCGATCGACGCCACCACCCTG
GAAGTGACGCTCAAAGCGCCGACGCCTTACTTCCTGGAGATGCTGACCCACCAGGCGACCTATCCGGTCAGCAAGGCCTC
GATTGAAAAGCTCGGCGCCGACTGGATCAAGCCCGGCAAGCTCGTCTCGAACGGCGCCTATACGCTGGCCGAATGGGTTC
CCAACGACCACATGAAGCTGGTCAAGAATCCGAAATTCTGGGATGCGGCGACCGTCAAGTTCGACGTGGTCAACTACATC
CCGACCGAAGACCGCTCATCGGCGATGAAGCGCTTCGAGGCAGGCGAACTCGACAGCTATGACGATCTGCCGACCGAACA
GCTCGCCGACCTCAAGACCAAGTTCGGCGACCAGATCCATGTCGGCCCGTATCTCGGCACCTACTACTATGCGATCAAGA
CCGACAAGGCGCCGTGGAACAATCCTGAACTGCGTACCGCCATCTCGATGGCGATCGACCGCGACTTCATCGCCGAAAAA
GTCTGGCAAAACTCCATGCTGCCCGGCTATTCGATGGTGCCTCCCGGCATCGAGGGCTACACGCCGGCAATGGCCAAATA
CGCCGAAATGCCGCAGATCGACCGCGAGGACGCGGCCAAGAAAATCCTCGAGAAACTCGGCTACACGCCCGAACATCCGC
TGAAGATGGAAATCCGCTACAACACCTCGGAGAACCACAAGAACACCGCTGTGGCCATCCAGGAGCAGCTGAAGCCGCTT
GGCGTCGACGTCACGCTGCTCAACACCGACACCAAGACGCACTACTCCTTCCTCGAGCAGAAGGGCGACTATGACGTGGC
GCGTGCCGCCTGGATCGCCGACTACAAGGATCCGGAAACCTTCCTCGGCATCTCGCGCAAGGCGAGCGGCAACAACTACT
CGAACTACAACAGCCCGGCCTATGAAGCGGCCATGGACAAGGCAGCCGCCGCCGGCGGCAAGCCCGAGGAGCGCATGAAG
GAGCTCTCCGAGGCCGAGCGCATTCTCGTCGACGACGTCGGCCAGATCCCACTGCTTTACTACAGCTACCACGACATCGT
GTCCTCGAAGCTGCATGGCTTCGTCGACAATGTGATGGATGTCCATCCGTCGCGTTTCGTCAGCAAGGATTGA

Upstream 100 bases:

>100_bases
GCCGGGGGGAACCGGCGGCGCGCTCAAAGGAACCAGGCATCGGTTCCGGGGCGTCAACACTTAGAGGCGCGCCGACTGCT
GCGCCGACAGGGAGAACTTC

Downstream 100 bases:

>100_bases
TCCCTGGCCAAGCCGCCGCGCACTTCGTGCGCGGCGGTGCTGGTTTGCCATCGCATCGGCCGGGAAACGCAATCGATTTT
CGGAAAATCCGGTGCGAAGA

Product: ABC transporter, peptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MLKNMLKATVFATTMAVAAGAFYSPAFAESVYNRGTAAESESVDPHKTSTVYEANVLRDLFQGLVMQDQKANLIPGAAES
WTVSDDGTVYTFKLRKDGTWSDGSPVTADDFVYAFHRLEDPATGAEYASMLYPVKGAEDFNTKKGKPEDMGVKAIDATTL
EVTLKAPTPYFLEMLTHQATYPVSKASIEKLGADWIKPGKLVSNGAYTLAEWVPNDHMKLVKNPKFWDAATVKFDVVNYI
PTEDRSSAMKRFEAGELDSYDDLPTEQLADLKTKFGDQIHVGPYLGTYYYAIKTDKAPWNNPELRTAISMAIDRDFIAEK
VWQNSMLPGYSMVPPGIEGYTPAMAKYAEMPQIDREDAAKKILEKLGYTPEHPLKMEIRYNTSENHKNTAVAIQEQLKPL
GVDVTLLNTDTKTHYSFLEQKGDYDVARAAWIADYKDPETFLGISRKASGNNYSNYNSPAYEAAMDKAAAAGGKPEERMK
ELSEAERILVDDVGQIPLLYYSYHDIVSSKLHGFVDNVMDVHPSRFVSKD

Sequences:

>Translated_530_residues
MLKNMLKATVFATTMAVAAGAFYSPAFAESVYNRGTAAESESVDPHKTSTVYEANVLRDLFQGLVMQDQKANLIPGAAES
WTVSDDGTVYTFKLRKDGTWSDGSPVTADDFVYAFHRLEDPATGAEYASMLYPVKGAEDFNTKKGKPEDMGVKAIDATTL
EVTLKAPTPYFLEMLTHQATYPVSKASIEKLGADWIKPGKLVSNGAYTLAEWVPNDHMKLVKNPKFWDAATVKFDVVNYI
PTEDRSSAMKRFEAGELDSYDDLPTEQLADLKTKFGDQIHVGPYLGTYYYAIKTDKAPWNNPELRTAISMAIDRDFIAEK
VWQNSMLPGYSMVPPGIEGYTPAMAKYAEMPQIDREDAAKKILEKLGYTPEHPLKMEIRYNTSENHKNTAVAIQEQLKPL
GVDVTLLNTDTKTHYSFLEQKGDYDVARAAWIADYKDPETFLGISRKASGNNYSNYNSPAYEAAMDKAAAAGGKPEERMK
ELSEAERILVDDVGQIPLLYYSYHDIVSSKLHGFVDNVMDVHPSRFVSKD
>Mature_530_residues
MLKNMLKATVFATTMAVAAGAFYSPAFAESVYNRGTAAESESVDPHKTSTVYEANVLRDLFQGLVMQDQKANLIPGAAES
WTVSDDGTVYTFKLRKDGTWSDGSPVTADDFVYAFHRLEDPATGAEYASMLYPVKGAEDFNTKKGKPEDMGVKAIDATTL
EVTLKAPTPYFLEMLTHQATYPVSKASIEKLGADWIKPGKLVSNGAYTLAEWVPNDHMKLVKNPKFWDAATVKFDVVNYI
PTEDRSSAMKRFEAGELDSYDDLPTEQLADLKTKFGDQIHVGPYLGTYYYAIKTDKAPWNNPELRTAISMAIDRDFIAEK
VWQNSMLPGYSMVPPGIEGYTPAMAKYAEMPQIDREDAAKKILEKLGYTPEHPLKMEIRYNTSENHKNTAVAIQEQLKPL
GVDVTLLNTDTKTHYSFLEQKGDYDVARAAWIADYKDPETFLGISRKASGNNYSNYNSPAYEAAMDKAAAAGGKPEERMK
ELSEAERILVDDVGQIPLLYYSYHDIVSSKLHGFVDNVMDVHPSRFVSKD

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=514, Percent_Identity=39.4941634241245, Blast_Score=364, Evalue=1e-102,
Organism=Escherichia coli, GI87081878, Length=496, Percent_Identity=37.5, Blast_Score=341, Evalue=6e-95,
Organism=Escherichia coli, GI1789397, Length=494, Percent_Identity=31.5789473684211, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1787762, Length=528, Percent_Identity=26.7045454545455, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1787052, Length=412, Percent_Identity=26.2135922330097, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1789966, Length=546, Percent_Identity=22.7106227106227, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1787551, Length=442, Percent_Identity=23.7556561085973, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789887, Length=482, Percent_Identity=23.2365145228216, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59037; Mature: 59037

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNMLKATVFATTMAVAAGAFYSPAFAESVYNRGTAAESESVDPHKTSTVYEANVLRDL
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FQGLVMQDQKANLIPGAAESWTVSDDGTVYTFKLRKDGTWSDGSPVTADDFVYAFHRLED
HHHHHCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
PATGAEYASMLYPVKGAEDFNTKKGKPEDMGVKAIDATTLEVTLKAPTPYFLEMLTHQAT
CCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCEEEEECEEEEEEEECCCHHHHHHHHHHCC
YPVSKASIEKLGADWIKPGKLVSNGAYTLAEWVPNDHMKLVKNPKFWDAATVKFDVVNYI
CCCHHHHHHHHCCCCCCCCCEECCCCEEEHHHCCCCCHHHHCCCCCCCCEEEEEEEEECC
PTEDRSSAMKRFEAGELDSYDDLPTEQLADLKTKFGDQIHVGPYLGTYYYAIKTDKAPWN
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCCC
NPELRTAISMAIDRDFIAEKVWQNSMLPGYSMVPPGIEGYTPAMAKYAEMPQIDREDAAK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHH
KILEKLGYTPEHPLKMEIRYNTSENHKNTAVAIQEQLKPLGVDVTLLNTDTKTHYSFLEQ
HHHHHHCCCCCCCEEEEEEECCCCCCCHHHEEEHHHCCCCCCEEEEEECCCHHHHHHHHH
KGDYDVARAAWIADYKDPETFLGISRKASGNNYSNYNSPAYEAAMDKAAAAGGKPEERMK
CCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
ELSEAERILVDDVGQIPLLYYSYHDIVSSKLHGFVDNVMDVHPSRFVSKD
HHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MLKNMLKATVFATTMAVAAGAFYSPAFAESVYNRGTAAESESVDPHKTSTVYEANVLRDL
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FQGLVMQDQKANLIPGAAESWTVSDDGTVYTFKLRKDGTWSDGSPVTADDFVYAFHRLED
HHHHHCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
PATGAEYASMLYPVKGAEDFNTKKGKPEDMGVKAIDATTLEVTLKAPTPYFLEMLTHQAT
CCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCEEEEECEEEEEEEECCCHHHHHHHHHHCC
YPVSKASIEKLGADWIKPGKLVSNGAYTLAEWVPNDHMKLVKNPKFWDAATVKFDVVNYI
CCCHHHHHHHHCCCCCCCCCEECCCCEEEHHHCCCCCHHHHCCCCCCCCEEEEEEEEECC
PTEDRSSAMKRFEAGELDSYDDLPTEQLADLKTKFGDQIHVGPYLGTYYYAIKTDKAPWN
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCCC
NPELRTAISMAIDRDFIAEKVWQNSMLPGYSMVPPGIEGYTPAMAKYAEMPQIDREDAAK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHH
KILEKLGYTPEHPLKMEIRYNTSENHKNTAVAIQEQLKPLGVDVTLLNTDTKTHYSFLEQ
HHHHHHCCCCCCCEEEEEEECCCCCCCHHHEEEHHHCCCCCCEEEEEECCCHHHHHHHHH
KGDYDVARAAWIADYKDPETFLGISRKASGNNYSNYNSPAYEAAMDKAAAAGGKPEERMK
CCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
ELSEAERILVDDVGQIPLLYYSYHDIVSSKLHGFVDNVMDVHPSRFVSKD
HHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]