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The map label for this gene is ydfH [C]

Identifier: 13476176

GI number: 13476176

Start: 6138072

End: 6138740

Strand: Direct

Name: ydfH [C]

Synonym: mlr7428

Alternate gene names: 13476176

Gene position: 6138072-6138740 (Clockwise)

Preceding gene: 13476175

Following gene: 13476177

Centisome position: 87.24

GC content: 67.56

Gene sequence:

>669_bases
ATGGCAAAGGGCACGGACGACACCATCGCGGTGCGCATCAGCAAGGTGCTGGCGGACCGTATCATCTCGGGCGCGATCGA
GCCGGGGGCTAGGCTGCGGCAGGATCATGTCGCCGAGGAATTCAACACCAGCCATGTTCCGGTGCGCGAGGCCTTCCGCC
GTCTGGAGGCGCAAGGCCTGGCCGTCAGCGAACCGCGCCGTGGCGTGCGCGTCGCGGCTTTTGATCTCGGCGAAGTCAAG
GAAGTCGCCGAAATGCGGGCCGCGCTCGAAGTGCTGGCGCTGCGCCATGCCGCGCCGCATCTGACGTCAGCCATTCTCGA
TCTCGCCGAAGAGGCGACCAAGGCCGGCGACAAATCCCGCGACGTTCGGTCCTGGGAAGAAGCCAACCGCGCCTTCCACC
GGCTGATCCTGGCGCCATGCGGCATGCCACGCCTGCTCGCCACCATCGACGATCTGCATGCGGCCAGCGCCCGCTTCCTG
TTTGCGGCATGGCGCTCGGAGTGGGAGGCGCGCACCGACCAGGACCATCGGGCGATCCTGACTGCCTTGCGGCAAGGAAA
TACCGAATCGGCCGCGGCGACGCTGGGGCGGCATGTCCAATGGATTGGCCGCAAGCCGGTCCGGACGGCCTCCGGCGCGA
CGCGTGAGGCCTTCGCGATCGTTGGTTGA

Upstream 100 bases:

>100_bases
CTTTTCGCCGAATTTCCCCTCGCTTTGTACTGGGGAGAACCTTGGCGAACACAGCCTCGCCGTCTCGACAAGCGGCCTTG
CGGCAAATTATCTATAAAAC

Downstream 100 bases:

>100_bases
TGCCTGTCACCCAAAAATGGCCCCCAATTTGGGGCGACATCCAAAAAACAACGGTCTGAAGCGCATCGCGGCGCAGTTCA
GACGGTGTTTGTCGTGGGAA

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; Transcription Regulator; GntR Domain-Containing Protein; GntR Family Regulatory; Transcriptional Regulator Gntr Family; FCD Domain Protein; Transcriptional Regulator Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Biotin Regulatory Protein BioR; GntR Domain Protein; Regulator PutR For Proline Utilization GntR Family; Transcriptional Regulater GntR Family Protein; GntR Family Transcription Regulator Protein; Transcription Regulator AsnC; Glycosyltransferase; Regulatory Protein GntR HTH; Transcriptional Regulator GNTR Family

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MAKGTDDTIAVRISKVLADRIISGAIEPGARLRQDHVAEEFNTSHVPVREAFRRLEAQGLAVSEPRRGVRVAAFDLGEVK
EVAEMRAALEVLALRHAAPHLTSAILDLAEEATKAGDKSRDVRSWEEANRAFHRLILAPCGMPRLLATIDDLHAASARFL
FAAWRSEWEARTDQDHRAILTALRQGNTESAAATLGRHVQWIGRKPVRTASGATREAFAIVG

Sequences:

>Translated_222_residues
MAKGTDDTIAVRISKVLADRIISGAIEPGARLRQDHVAEEFNTSHVPVREAFRRLEAQGLAVSEPRRGVRVAAFDLGEVK
EVAEMRAALEVLALRHAAPHLTSAILDLAEEATKAGDKSRDVRSWEEANRAFHRLILAPCGMPRLLATIDDLHAASARFL
FAAWRSEWEARTDQDHRAILTALRQGNTESAAATLGRHVQWIGRKPVRTASGATREAFAIVG
>Mature_221_residues
AKGTDDTIAVRISKVLADRIISGAIEPGARLRQDHVAEEFNTSHVPVREAFRRLEAQGLAVSEPRRGVRVAAFDLGEVKE
VAEMRAALEVLALRHAAPHLTSAILDLAEEATKAGDKSRDVRSWEEANRAFHRLILAPCGMPRLLATIDDLHAASARFLF
AAWRSEWEARTDQDHRAILTALRQGNTESAAATLGRHVQWIGRKPVRTASGATREAFAIVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=27.1356783919598, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24336; Mature: 24205

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGTDDTIAVRISKVLADRIISGAIEPGARLRQDHVAEEFNTSHVPVREAFRRLEAQGL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
AVSEPRRGVRVAAFDLGEVKEVAEMRAALEVLALRHAAPHLTSAILDLAEEATKAGDKSR
CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DVRSWEEANRAFHRLILAPCGMPRLLATIDDLHAASARFLFAAWRSEWEARTDQDHRAIL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TALRQGNTESAAATLGRHVQWIGRKPVRTASGATREAFAIVG
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEECC
>Mature Secondary Structure 
AKGTDDTIAVRISKVLADRIISGAIEPGARLRQDHVAEEFNTSHVPVREAFRRLEAQGL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
AVSEPRRGVRVAAFDLGEVKEVAEMRAALEVLALRHAAPHLTSAILDLAEEATKAGDKSR
CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DVRSWEEANRAFHRLILAPCGMPRLLATIDDLHAASARFLFAAWRSEWEARTDQDHRAIL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TALRQGNTESAAATLGRHVQWIGRKPVRTASGATREAFAIVG
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA