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The map label for this gene is ydcV [H]

Identifier: 13476143

GI number: 13476143

Start: 6106822

End: 6107643

Strand: Direct

Name: ydcV [H]

Synonym: mlr7381

Alternate gene names: 13476143

Gene position: 6106822-6107643 (Clockwise)

Preceding gene: 13476142

Following gene: 13476144

Centisome position: 86.79

GC content: 65.33

Gene sequence:

>822_bases
ATGAAAGCCGAACGCGCCGGAACAAAACGCGATGGCCGCTGGCTCGGCCTCTACGTGCTTGCCTATCTGGTGTTTCTCTA
TCTGCCGGTCCTGCTGATCCCGCTGTTTTCCTTCAACGATTCCATCCAAGCGGCGTTTCCGCTGCAGGGCTTCACGCTGC
AGTGGTACCAGACGCTCTACAGCAATCCGGCGCTGTCCGGCGCGCTCGTGAACAGTCTCGTCATCGCCACCGTCGCCGCT
TCCGGTGCAACGCTGTGCGGCATCACCGTGTCCTATATGGACCTCTATGGCCGCTCGCCGTTGGCCGCCACGATCAGCGG
CATCGCCCGGCTGCCGATCCTCATCCCGGGCGTCATCGTCGGCATATCGCTGCTGATCCTGATCAACCTGATCGGCCTCG
GGCCATCGCGCGTCGCCATCGTGCTCGGCCACATATTGGTGGCATTGCCGACGACCGTGGTCGTCATGCGCAGCCGTTTC
GCCGCCATCCCCCGGACCGTTCGCGAGGCGGCGCTCGACCTCGGCGCTTCCGACTGGACGACGTTCCGGCGCGTCATGCT
GCCGCTCAGCCTGCCCGCCGTGCTGTCGGCCTTCATGCTGGCCTTCCTGATCTCCTTCGACGAATTCATCGTCGTCTTCT
TCCTCGCCGGCACCGATCCGACCCTGCCGCTCTACATCTGGAGCCAGCTGCGCTTCCCCCGCTCGCTCCCGACCGTCATG
GCGCTGGGGACGGTGATCCTGGCCACATCCTTCATCATCGCCGGCACCGCCGAAATCCTGCGCCATCGCGGGCTCGGCGC
CGCGCGCCGCAATCCAGCCTGA

Upstream 100 bases:

>100_bases
ACTGGCCGTTCGGCGCCGCACTTTCGGTCTGCGTCATGCTGGTCATCCTCGCCGTGGTGCTGGTCGCGCGCAGCGCGGAC
CGCAGATTTGGCAGCCGCAC

Downstream 100 bases:

>100_bases
CCATAACAATGAGAGGAGAACGAAAATGACATTCCACCTGACATCGATAAGCGGACACAAGGCCCGCGCCGGCCTCGCCG
TGCTGGCGCTCGCACTGTCT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKAERAGTKRDGRWLGLYVLAYLVFLYLPVLLIPLFSFNDSIQAAFPLQGFTLQWYQTLYSNPALSGALVNSLVIATVAA
SGATLCGITVSYMDLYGRSPLAATISGIARLPILIPGVIVGISLLILINLIGLGPSRVAIVLGHILVALPTTVVVMRSRF
AAIPRTVREAALDLGASDWTTFRRVMLPLSLPAVLSAFMLAFLISFDEFIVVFFLAGTDPTLPLYIWSQLRFPRSLPTVM
ALGTVILATSFIIAGTAEILRHRGLGAARRNPA

Sequences:

>Translated_273_residues
MKAERAGTKRDGRWLGLYVLAYLVFLYLPVLLIPLFSFNDSIQAAFPLQGFTLQWYQTLYSNPALSGALVNSLVIATVAA
SGATLCGITVSYMDLYGRSPLAATISGIARLPILIPGVIVGISLLILINLIGLGPSRVAIVLGHILVALPTTVVVMRSRF
AAIPRTVREAALDLGASDWTTFRRVMLPLSLPAVLSAFMLAFLISFDEFIVVFFLAGTDPTLPLYIWSQLRFPRSLPTVM
ALGTVILATSFIIAGTAEILRHRGLGAARRNPA
>Mature_273_residues
MKAERAGTKRDGRWLGLYVLAYLVFLYLPVLLIPLFSFNDSIQAAFPLQGFTLQWYQTLYSNPALSGALVNSLVIATVAA
SGATLCGITVSYMDLYGRSPLAATISGIARLPILIPGVIVGISLLILINLIGLGPSRVAIVLGHILVALPTTVVVMRSRF
AAIPRTVREAALDLGASDWTTFRRVMLPLSLPAVLSAFMLAFLISFDEFIVVFFLAGTDPTLPLYIWSQLRFPRSLPTVM
ALGTVILATSFIIAGTAEILRHRGLGAARRNPA

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=273, Percent_Identity=35.1648351648352, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787368, Length=233, Percent_Identity=34.7639484978541, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1787081, Length=273, Percent_Identity=30.4029304029304, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29459; Mature: 29459

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAERAGTKRDGRWLGLYVLAYLVFLYLPVLLIPLFSFNDSIQAAFPLQGFTLQWYQTLY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHH
SNPALSGALVNSLVIATVAASGATLCGITVSYMDLYGRSPLAATISGIARLPILIPGVIV
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GISLLILINLIGLGPSRVAIVLGHILVALPTTVVVMRSRFAAIPRTVREAALDLGASDWT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
TFRRVMLPLSLPAVLSAFMLAFLISFDEFIVVFFLAGTDPTLPLYIWSQLRFPRSLPTVM
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHH
ALGTVILATSFIIAGTAEILRHRGLGAARRNPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKAERAGTKRDGRWLGLYVLAYLVFLYLPVLLIPLFSFNDSIQAAFPLQGFTLQWYQTLY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHH
SNPALSGALVNSLVIATVAASGATLCGITVSYMDLYGRSPLAATISGIARLPILIPGVIV
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GISLLILINLIGLGPSRVAIVLGHILVALPTTVVVMRSRFAAIPRTVREAALDLGASDWT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
TFRRVMLPLSLPAVLSAFMLAFLISFDEFIVVFFLAGTDPTLPLYIWSQLRFPRSLPTVM
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHH
ALGTVILATSFIIAGTAEILRHRGLGAARRNPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]