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The map label for this gene is ycjC [C]

Identifier: 13476100

GI number: 13476100

Start: 6059094

End: 6059672

Strand: Reverse

Name: ycjC [C]

Synonym: mll7326

Alternate gene names: 13476100

Gene position: 6059672-6059094 (Counterclockwise)

Preceding gene: 13476102

Following gene: 13476095

Centisome position: 86.12

GC content: 63.21

Gene sequence:

>579_bases
GTGTTGGAGGTGGCCATCGGCCGCGAGGTGCGGGCGTTCCGCAAGAAGCTCGGCATCACCGTCGCCGATCTCGCCGTCGC
CACCGACATTTCGCTGGGCATGCTGTCGAAGATCGAGAACGGCATAACCTCTCCGTCGCTGACCACGCTGCAGGCGCTGT
CGCGGGCGCTCGGCGTTCCTGTCACCGCCTTCTTCCGTCGCTTCGAGGAGGAGCGCAGTGCTGTCTTCGTCAAGGCCGGC
GAAGGGCTGGATGTCGAGCGCCGCGGCACGCGCGCCGGCCACCAGTACAATCTGCTCGGCCATATCGGGTCGAACACCAG
CGGTGTCGTCGTCGAACCCTACCTGATCACGCTGACCGAAGATTCGGACGTGTTCCCGACCTTCCAGCATGAGGGCATGG
AGTTCCTCTACATGCTTGAAGGCGAGGTCGTTTACCGGCACGGCAGCAACCTTTATCCGATGAAGCCCGGCGACAGCCTG
TTCTTCGACGCCGATGCGCCGCATGGGCCGGAGCAGTTGACGAAGCTGCCGATGCGGTATCTGTCGATCATCTGCTATCC
GCAGAACAGCGCGGGTTAA

Upstream 100 bases:

>100_bases
CGCCAAGCCGAAGCCCCAGCCAAAGGTCTCGGCCGACGGCAAGACCATCCGCGCACCGCTGACGCAGAACCCGCACGCCA
TCCGTGATACACGCGAGAAG

Downstream 100 bases:

>100_bases
TCAGGCCCAAACCCCGGGCTCGTCGCGCTCCCATCGTCCAACTTCGACAGCCATTCCACCAGCGTCGGCCGATAGCGCGT
GAGGCCCTTGTAGGTGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Helix-Turn-Helix Domain-Containing Protein; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator MerR Family; Transcriptional Regulator-Like Protein; Transcriptional Regulator With Cupin Domain; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Cro/CI Family; Transcription Regulator; Cupin Domain-Containing Protein

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFRRFEEERSAVFVKAG
EGLDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTEDSDVFPTFQHEGMEFLYMLEGEVVYRHGSNLYPMKPGDSL
FFDADAPHGPEQLTKLPMRYLSIICYPQNSAG

Sequences:

>Translated_192_residues
MLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFRRFEEERSAVFVKAG
EGLDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTEDSDVFPTFQHEGMEFLYMLEGEVVYRHGSNLYPMKPGDSL
FFDADAPHGPEQLTKLPMRYLSIICYPQNSAG
>Mature_192_residues
MLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFRRFEEERSAVFVKAG
EGLDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTEDSDVFPTFQHEGMEFLYMLEGEVVYRHGSNLYPMKPGDSL
FFDADAPHGPEQLTKLPMRYLSIICYPQNSAG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21140; Mature: 21140

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVP
CEEECCCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
VTAFFRRFEEERSAVFVKAGEGLDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTE
HHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCEEEEEEC
DSDVFPTFQHEGMEFLYMLEGEVVYRHGSNLYPMKPGDSLFFDADAPHGPEQLTKLPMRY
CCCCCCCHHHCCCEEEEEECCEEEEECCCEECCCCCCCCEEEECCCCCCHHHHHHHHHHH
LSIICYPQNSAG
HEEEEECCCCCC
>Mature Secondary Structure
MLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVP
CEEECCCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
VTAFFRRFEEERSAVFVKAGEGLDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTE
HHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCEEEEEEC
DSDVFPTFQHEGMEFLYMLEGEVVYRHGSNLYPMKPGDSLFFDADAPHGPEQLTKLPMRY
CCCCCCCHHHCCCEEEEEECCEEEEECCCEECCCCCCCCEEEECCCCCCHHHHHHHHHHH
LSIICYPQNSAG
HEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA