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The map label for this gene is yfdE [H]

Identifier: 13475961

GI number: 13475961

Start: 5910129

End: 5911295

Strand: Reverse

Name: yfdE [H]

Synonym: mll7158

Alternate gene names: 13475961

Gene position: 5911295-5910129 (Counterclockwise)

Preceding gene: 13475962

Following gene: 13475960

Centisome position: 84.01

GC content: 65.38

Gene sequence:

>1167_bases
ATGAGAATGCCGGCAACCGCCGAATTGCCGCTTGCCGGTCTCACCGTCGTCGACATGAGCCAGTTCCTGTCCGGCCCCTA
TTGCTCGCTGCGCCTGCTCGATCTCGGTGCCCGTGTCATCAAGATCGAGCGCCCGGATGGCGGCGACCTGTCGCGCCGGC
TCTATCTCAGCGACACCGAGATCGGCGGCGATTCCACCATCTTCCACGCCATCAACCGCGCCAAGGAAAGCTTTGCCATC
GACCTCAAGAACGAGGCCGATCTCAAGGCGCTGCGCGGGCTTCTGGCCAAGGCCGATGTGCTGATCCAGAATTTCCGGCC
CGGCGTCATCGAGCGGCTCGGCTTCGACTATGAGGCCGTTCGCAAGATCAATCCGCGTTTAGTCTACGCCTCGATCAGCG
GCTATGGCGAGCACGGCCCATGGGTCAAGCGGCCGGGCCAGGATCTGCTGGCGCAATCGCGCTCCGGCGTGATGTGGCTG
AACGGCGACGAGGACCAGGGGCCGGTGCCGTTCGGGCTGGCCATCGGTGACATGCTGGCGGGTGCGGCCTGCGCGCAAGG
CATTCTGGCGGCGCTGGTGCGGCGCGGCATTACCGGCCAGGGCAGCCATATCGAAACCAGCCTGCTGGAAGCGCTGGTCG
ATTTCCAGTTCGAGGTGCTGACCACGCACCTCAATGACGGCCGCCGCTTGCCCAGGCGCTCCAGCTTCCGCAGCGCGCAT
GCCTATCTCTCGGCGCCCTACGGCGTCTACCCGGCCAAGGACGGCTATCTCGCTATTGCCATGACGCCGATCCCGAAACT
CGCCGACCTGCTGTCGCTCGACGAGCTGGCGCCCTATCGCGACGAACCGGCGTCGTGGTTCACCGCGCGCGACGACATCA
AGGCGATCATCGCACAGCGGGTCGCCAGCAAAACCATCGACGAATGGCTCGCCATTCTCGAGCCGGCCGACATCTGGTGC
GCCAAGGTGCTGACCTGGCCGGAGATGCTGGCCAGCGAAGGTTTTCAGTCGCTCGACATGCTGCAGACGGTGACGCGCGA
GGACGATGTCTCGATCCTCACCACCAGTTCGCCGCTCAGGGTCGACGGCATCAGGGCCAAGGTCGATCGCGCGGCACCAC
GCATCGGCGAGCACAGTGCCGCGATCCGCGAGGAGTTCGGCCTGTGA

Upstream 100 bases:

>100_bases
ATGAAGTGTTCAAGGGCGAAGGCGAACTCGTCCTCTATTGCGAGCATTTGCAGACGGTGAAGTACCGCAACCCGGCCGAT
TTCGTCGGCAAGACGGAGAA

Downstream 100 bases:

>100_bases
CCACGCTCAAGGGCATGACCTGGAGCCATCCGCGCGGCTACGATCCGATGGTCGCCTGCTCTTCGCTTTGGCAGCAGAAG
ACCGGCGTCGCTATCCACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MRMPATAELPLAGLTVVDMSQFLSGPYCSLRLLDLGARVIKIERPDGGDLSRRLYLSDTEIGGDSTIFHAINRAKESFAI
DLKNEADLKALRGLLAKADVLIQNFRPGVIERLGFDYEAVRKINPRLVYASISGYGEHGPWVKRPGQDLLAQSRSGVMWL
NGDEDQGPVPFGLAIGDMLAGAACAQGILAALVRRGITGQGSHIETSLLEALVDFQFEVLTTHLNDGRRLPRRSSFRSAH
AYLSAPYGVYPAKDGYLAIAMTPIPKLADLLSLDELAPYRDEPASWFTARDDIKAIIAQRVASKTIDEWLAILEPADIWC
AKVLTWPEMLASEGFQSLDMLQTVTREDDVSILTTSSPLRVDGIRAKVDRAAPRIGEHSAAIREEFGL

Sequences:

>Translated_388_residues
MRMPATAELPLAGLTVVDMSQFLSGPYCSLRLLDLGARVIKIERPDGGDLSRRLYLSDTEIGGDSTIFHAINRAKESFAI
DLKNEADLKALRGLLAKADVLIQNFRPGVIERLGFDYEAVRKINPRLVYASISGYGEHGPWVKRPGQDLLAQSRSGVMWL
NGDEDQGPVPFGLAIGDMLAGAACAQGILAALVRRGITGQGSHIETSLLEALVDFQFEVLTTHLNDGRRLPRRSSFRSAH
AYLSAPYGVYPAKDGYLAIAMTPIPKLADLLSLDELAPYRDEPASWFTARDDIKAIIAQRVASKTIDEWLAILEPADIWC
AKVLTWPEMLASEGFQSLDMLQTVTREDDVSILTTSSPLRVDGIRAKVDRAAPRIGEHSAAIREEFGL
>Mature_388_residues
MRMPATAELPLAGLTVVDMSQFLSGPYCSLRLLDLGARVIKIERPDGGDLSRRLYLSDTEIGGDSTIFHAINRAKESFAI
DLKNEADLKALRGLLAKADVLIQNFRPGVIERLGFDYEAVRKINPRLVYASISGYGEHGPWVKRPGQDLLAQSRSGVMWL
NGDEDQGPVPFGLAIGDMLAGAACAQGILAALVRRGITGQGSHIETSLLEALVDFQFEVLTTHLNDGRRLPRRSSFRSAH
AYLSAPYGVYPAKDGYLAIAMTPIPKLADLLSLDELAPYRDEPASWFTARDDIKAIIAQRVASKTIDEWLAILEPADIWC
AKVLTWPEMLASEGFQSLDMLQTVTREDDVSILTTSSPLRVDGIRAKVDRAAPRIGEHSAAIREEFGL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=28.2722513089005, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI300863124, Length=340, Percent_Identity=30.8823529411765, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI42794625, Length=384, Percent_Identity=29.9479166666667, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI266456254, Length=384, Percent_Identity=29.9479166666667, Blast_Score=145, Evalue=9e-35,
Organism=Homo sapiens, GI300863126, Length=382, Percent_Identity=25.3926701570681, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI13376042, Length=340, Percent_Identity=27.3529411764706, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=30.5660377358491, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI266458397, Length=205, Percent_Identity=34.1463414634146, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=35.2112676056338, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=35.2112676056338, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=383, Percent_Identity=32.1148825065274, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=27.9012345679012, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=25.3101736972705, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=325, Percent_Identity=27.3846153846154, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=324, Percent_Identity=27.1604938271605, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=33.5078534031414, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24585488, Length=330, Percent_Identity=27.2727272727273, Blast_Score=112, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42513; Mature: 42513

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMPATAELPLAGLTVVDMSQFLSGPYCSLRLLDLGARVIKIERPDGGDLSRRLYLSDTE
CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCC
IGGDSTIFHAINRAKESFAIDLKNEADLKALRGLLAKADVLIQNFRPGVIERLGFDYEAV
CCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHH
RKINPRLVYASISGYGEHGPWVKRPGQDLLAQSRSGVMWLNGDEDQGPVPFGLAIGDMLA
HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
GAACAQGILAALVRRGITGQGSHIETSLLEALVDFQFEVLTTHLNDGRRLPRRSSFRSAH
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH
AYLSAPYGVYPAKDGYLAIAMTPIPKLADLLSLDELAPYRDEPASWFTARDDIKAIIAQR
HHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
VASKTIDEWLAILEPADIWCAKVLTWPEMLASEGFQSLDMLQTVTREDDVSILTTSSPLR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCE
VDGIRAKVDRAAPRIGEHSAAIREEFGL
ECCHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRMPATAELPLAGLTVVDMSQFLSGPYCSLRLLDLGARVIKIERPDGGDLSRRLYLSDTE
CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCC
IGGDSTIFHAINRAKESFAIDLKNEADLKALRGLLAKADVLIQNFRPGVIERLGFDYEAV
CCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHH
RKINPRLVYASISGYGEHGPWVKRPGQDLLAQSRSGVMWLNGDEDQGPVPFGLAIGDMLA
HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
GAACAQGILAALVRRGITGQGSHIETSLLEALVDFQFEVLTTHLNDGRRLPRRSSFRSAH
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH
AYLSAPYGVYPAKDGYLAIAMTPIPKLADLLSLDELAPYRDEPASWFTARDDIKAIIAQR
HHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
VASKTIDEWLAILEPADIWCAKVLTWPEMLASEGFQSLDMLQTVTREDDVSILTTSSPLR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCE
VDGIRAKVDRAAPRIGEHSAAIREEFGL
ECCHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]