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The map label for this gene is ydhC [H]

Identifier: 13475949

GI number: 13475949

Start: 5898930

End: 5899691

Strand: Direct

Name: ydhC [H]

Synonym: mlr7144

Alternate gene names: 13475949

Gene position: 5898930-5899691 (Clockwise)

Preceding gene: 13475948

Following gene: 13475958

Centisome position: 83.84

GC content: 63.78

Gene sequence:

>762_bases
GTGCAGTTCGTACACGAGGATACTCATGTCCAGTTCGGCGGTTTTCCGCTACGCTGGAGTCCGCGTGACTGGGAGCATCG
ATTGCGTGAATTTGCGGAAGGCCTGATCGAGAGGCCGCAGACGGTTGCCGAGCAGGTCGCCAACGTGCTGCGCGAGGCCA
TTGCTAGCGGAACGCTGAAGGCCGGCACGGCGCTACGCCAGGACGACCTTGCCGAGCAGTTCGGCTTCAGCCGCATGCCT
ATTCGTGACGCGCTTCGCCAATTGGAGGCGGAGGGCATTGTCTCCATTCACCCCACCAAGGGCGCGCATGTCGCACGGAT
GGACGGCGCCGAGATCAGCGAAATCTACGCGGTGCGCGAATTGCTCGAATGCGAAGCGCTTCGCCTCTCCATTCCGGCTT
TGTTGGACGGCAAGCTCGATGAGGCCGAACAGGTGCTCGACCAGATCGACGCGGAGCGCAATGTCGGCCGCTGGGGGGCG
CTGAACCGGACCTTTCACCTGTCGCTCTACGCTGCCTGCGGCAACCAGCGTCTGCTCGGTCTGATCGAGGCGCACCACAA
CGCCGCCGATCGCTATGTCCGCATCCTCTTGTCGAACCTCGACTATCGCACCCGCTCACAGGCGGAACATCGCGACCTGC
TGGCTGCCTGCCGCCAGCGCGACGGCAAGAAGGCCGTGAGCGTTCTGCGCCAGCACCTTCGCGAAGGCAGCGGCACGCTC
GTCAATGCGATAGAGGGCGGCGGCCTGTCGCGAAAATCCTAG

Upstream 100 bases:

>100_bases
CGCCGCGCCTTCGCTGGGCAGCGCCCTGCAGAAATATCTGACAGAGACCATCGGCTCGGGGCATCTCGCCGTCAACGCTG
GCTAGCCTGCAGCGGGCCCG

Downstream 100 bases:

>100_bases
TCGCGATGGTCCTGCTGCTCGGGCTGGAGCGCATCACCGCGTGCGCCACCGGTTCGTAAGAACCGCACCGATTTTCAGCT
CAGGCCGGCTTGCGTTCGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MQFVHEDTHVQFGGFPLRWSPRDWEHRLREFAEGLIERPQTVAEQVANVLREAIASGTLKAGTALRQDDLAEQFGFSRMP
IRDALRQLEAEGIVSIHPTKGAHVARMDGAEISEIYAVRELLECEALRLSIPALLDGKLDEAEQVLDQIDAERNVGRWGA
LNRTFHLSLYAACGNQRLLGLIEAHHNAADRYVRILLSNLDYRTRSQAEHRDLLAACRQRDGKKAVSVLRQHLREGSGTL
VNAIEGGGLSRKS

Sequences:

>Translated_253_residues
MQFVHEDTHVQFGGFPLRWSPRDWEHRLREFAEGLIERPQTVAEQVANVLREAIASGTLKAGTALRQDDLAEQFGFSRMP
IRDALRQLEAEGIVSIHPTKGAHVARMDGAEISEIYAVRELLECEALRLSIPALLDGKLDEAEQVLDQIDAERNVGRWGA
LNRTFHLSLYAACGNQRLLGLIEAHHNAADRYVRILLSNLDYRTRSQAEHRDLLAACRQRDGKKAVSVLRQHLREGSGTL
VNAIEGGGLSRKS
>Mature_253_residues
MQFVHEDTHVQFGGFPLRWSPRDWEHRLREFAEGLIERPQTVAEQVANVLREAIASGTLKAGTALRQDDLAEQFGFSRMP
IRDALRQLEAEGIVSIHPTKGAHVARMDGAEISEIYAVRELLECEALRLSIPALLDGKLDEAEQVLDQIDAERNVGRWGA
LNRTFHLSLYAACGNQRLLGLIEAHHNAADRYVRILLSNLDYRTRSQAEHRDLLAACRQRDGKKAVSVLRQHLREGSGTL
VNAIEGGGLSRKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=204, Percent_Identity=25.9803921568627, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87082149, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081914, Length=142, Percent_Identity=30.2816901408451, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28329; Mature: 28329

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFVHEDTHVQFGGFPLRWSPRDWEHRLREFAEGLIERPQTVAEQVANVLREAIASGTLK
CCCCCCCCEEEECCEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHH
AGTALRQDDLAEQFGFSRMPIRDALRQLEAEGIVSIHPTKGAHVARMDGAEISEIYAVRE
HCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEECCCHHHHHHHHHHH
LLECEALRLSIPALLDGKLDEAEQVLDQIDAERNVGRWGALNRTFHLSLYAACGNQRLLG
HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHH
LIEAHHNAADRYVRILLSNLDYRTRSQAEHRDLLAACRQRDGKKAVSVLRQHLREGSGTL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
VNAIEGGGLSRKS
EEEECCCCCCCCC
>Mature Secondary Structure
MQFVHEDTHVQFGGFPLRWSPRDWEHRLREFAEGLIERPQTVAEQVANVLREAIASGTLK
CCCCCCCCEEEECCEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHH
AGTALRQDDLAEQFGFSRMPIRDALRQLEAEGIVSIHPTKGAHVARMDGAEISEIYAVRE
HCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEECCCHHHHHHHHHHH
LLECEALRLSIPALLDGKLDEAEQVLDQIDAERNVGRWGALNRTFHLSLYAACGNQRLLG
HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHH
LIEAHHNAADRYVRILLSNLDYRTRSQAEHRDLLAACRQRDGKKAVSVLRQHLREGSGTL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
VNAIEGGGLSRKS
EEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]