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The map label for this gene is ypdF [C]

Identifier: 13475946

GI number: 13475946

Start: 5895261

End: 5896481

Strand: Direct

Name: ypdF [C]

Synonym: mlr7141

Alternate gene names: 13475946

Gene position: 5895261-5896481 (Clockwise)

Preceding gene: 13475945

Following gene: 13475947

Centisome position: 83.79

GC content: 62.41

Gene sequence:

>1221_bases
TTGAAACGGACTCCAGGGCCCAACAAACGAGGAAGCAAAAGAATGCAACCAAATCTGAAATTCTCGCGCGGCGAATTTGC
GGATCGCCTCGCCAAGACGCGGCGAGCCATGGAGGCCAGGGGCGTCGATCTCCTCATCGTCAGCGACCCCTCCAACATGG
CCTGGCTGACCGGTTATGACGGCTGGTCCTTCTACGTGCACCAGGCGGTCATCGTGCCGCCCTCGGGCGAGCCGGTCTGG
TACGGCCGCGGCCAGGACGCCAACGGCGCCAAGCGCACCGCCTATCTCGCGCAGAACAACATCGTCGGCTATGCCGATCA
CTATGTGCAGTCGACGGAACGCCACCCGATGGATTTCTTGTCCAGCGTGCTTTCCGATCGCGGTTGGGGCAAGCTCACCA
TCGGCGTCGAGATGGACAACTACTGGTTCTCGGCCGCCGCCTTCGCCTCGCTGCAGAAGCATCTGCCCAATGCCCGCTTC
GTCGATGCCACCGCGCTGGTCAACTGGCAGCGCGCGGTGAAGAGCCCGACCGAGATCGACTATATGCGCAAGGCCGCCCG
CATCGTCGAAGCCATGCACCAGCGCATTTTCGACAGAATAGAGATCGGCATGCGCAAATGCGATCTCGTCGCCGAGATCT
ACGATGCCGGTACGCGCGGCGTCGACGGTATTGGCGGCGACTATCCGGCGATCGTGCCGCTGCTGCCGTCTGGCGTGGAC
GCCTCGGCGCCGCATCTGACCTGGGACGACCAGCCGATGAAGCGGGGCGAGGGCACCTTTTTCGAGATCGCCGGCTGCTA
CAACAGGTACCACTGTCCGCTGTCGCGCACCGTGTTCCTCGGCAAGCCGACGCAGGAATTCCTCGATGCCGAGAAGGCGA
CACTGGAAGGCATGGAGGCGGGGCTTGCCGCCGCAAAGCCCGGCAACGCCTGCGAGGACATCGCCAATGCCTTCTTCGCC
GTCTTGAAGAAATACGGCATCGTCAAGGACAACCGGACCGGCTACTCGATCGGTCTCTCCTATCCGCCGGATTGGGGCGA
ACGCACGATGAGCCTGCGTCCCGGCGACCACACCGAACTCAAGCCCGGCATGACCTTCCATTTCATGACCGGGCTCTGGC
TGGAAACGATGGGGCTGGAGATCACCGAGTCCATCCTGATCACCGAAACCGGTGTAGAGTGCCTGGCCAATGTTCCGCGC
AAACTGGTGGTGAAGAATTGA

Upstream 100 bases:

>100_bases
AAAGCTGATGCTGGCCGCAAAGCATGATCCGGAAAAGTGGGAACCGGTTTTCCGATCAGATCATGCTCAAGCAAAATTCC
TGGAGCCGGGTTCACCGAAG

Downstream 100 bases:

>100_bases
GCCCGATATCCAGCCTCCGCCCGTCGCCGATCGCGCCGACTGTCGATTTCGATCGTGATGGCGTCCAGCACGGTTTCCTG
CGCCTGCCCTACAGCCGCGA

Product: dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKRTPGPNKRGSKRMQPNLKFSRGEFADRLAKTRRAMEARGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVPPSGEPVW
YGRGQDANGAKRTAYLAQNNIVGYADHYVQSTERHPMDFLSSVLSDRGWGKLTIGVEMDNYWFSAAAFASLQKHLPNARF
VDATALVNWQRAVKSPTEIDYMRKAARIVEAMHQRIFDRIEIGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVD
ASAPHLTWDDQPMKRGEGTFFEIAGCYNRYHCPLSRTVFLGKPTQEFLDAEKATLEGMEAGLAAAKPGNACEDIANAFFA
VLKKYGIVKDNRTGYSIGLSYPPDWGERTMSLRPGDHTELKPGMTFHFMTGLWLETMGLEITESILITETGVECLANVPR
KLVVKN

Sequences:

>Translated_406_residues
MKRTPGPNKRGSKRMQPNLKFSRGEFADRLAKTRRAMEARGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVPPSGEPVW
YGRGQDANGAKRTAYLAQNNIVGYADHYVQSTERHPMDFLSSVLSDRGWGKLTIGVEMDNYWFSAAAFASLQKHLPNARF
VDATALVNWQRAVKSPTEIDYMRKAARIVEAMHQRIFDRIEIGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVD
ASAPHLTWDDQPMKRGEGTFFEIAGCYNRYHCPLSRTVFLGKPTQEFLDAEKATLEGMEAGLAAAKPGNACEDIANAFFA
VLKKYGIVKDNRTGYSIGLSYPPDWGERTMSLRPGDHTELKPGMTFHFMTGLWLETMGLEITESILITETGVECLANVPR
KLVVKN
>Mature_406_residues
MKRTPGPNKRGSKRMQPNLKFSRGEFADRLAKTRRAMEARGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVPPSGEPVW
YGRGQDANGAKRTAYLAQNNIVGYADHYVQSTERHPMDFLSSVLSDRGWGKLTIGVEMDNYWFSAAAFASLQKHLPNARF
VDATALVNWQRAVKSPTEIDYMRKAARIVEAMHQRIFDRIEIGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVD
ASAPHLTWDDQPMKRGEGTFFEIAGCYNRYHCPLSRTVFLGKPTQEFLDAEKATLEGMEAGLAAAKPGNACEDIANAFFA
VLKKYGIVKDNRTGYSIGLSYPPDWGERTMSLRPGDHTELKPGMTFHFMTGLWLETMGLEITESILITETGVECLANVPR
KLVVKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=256, Percent_Identity=24.609375, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789275, Length=272, Percent_Identity=27.5735294117647, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 45168; Mature: 45168

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS01159 WW_DOMAIN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTPGPNKRGSKRMQPNLKFSRGEFADRLAKTRRAMEARGVDLLIVSDPSNMAWLTGYD
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCC
GWSFYVHQAVIVPPSGEPVWYGRGQDANGAKRTAYLAQNNIVGYADHYVQSTERHPMDFL
CEEEEEEEEEEECCCCCEEEECCCCCCCCCHHEEEEECCCCEEHHHHHHHCCCCCCHHHH
SSVLSDRGWGKLTIGVEMDNYWFSAAAFASLQKHLPNARFVDATALVNWQRAVKSPTEID
HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCHHHH
YMRKAARIVEAMHQRIFDRIEIGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
ASAPHLTWDDQPMKRGEGTFFEIAGCYNRYHCPLSRTVFLGKPTQEFLDAEKATLEGMEA
CCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
GLAAAKPGNACEDIANAFFAVLKKYGIVKDNRTGYSIGLSYPPDWGERTMSLRPGDHTEL
CCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCCCEEECCCCCCCCC
KPGMTFHFMTGLWLETMGLEITESILITETGVECLANVPRKLVVKN
CCCCEEHHHHHHHHHHHCCHHHHHEEEEHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure
MKRTPGPNKRGSKRMQPNLKFSRGEFADRLAKTRRAMEARGVDLLIVSDPSNMAWLTGYD
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCC
GWSFYVHQAVIVPPSGEPVWYGRGQDANGAKRTAYLAQNNIVGYADHYVQSTERHPMDFL
CEEEEEEEEEEECCCCCEEEECCCCCCCCCHHEEEEECCCCEEHHHHHHHCCCCCCHHHH
SSVLSDRGWGKLTIGVEMDNYWFSAAAFASLQKHLPNARFVDATALVNWQRAVKSPTEID
HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCHHHH
YMRKAARIVEAMHQRIFDRIEIGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
ASAPHLTWDDQPMKRGEGTFFEIAGCYNRYHCPLSRTVFLGKPTQEFLDAEKATLEGMEA
CCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
GLAAAKPGNACEDIANAFFAVLKKYGIVKDNRTGYSIGLSYPPDWGERTMSLRPGDHTEL
CCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCCCEEECCCCCCCCC
KPGMTFHFMTGLWLETMGLEITESILITETGVECLANVPRKLVVKN
CCCCEEHHHHHHHHHHHCCHHHHHEEEEHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]