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The map label for this gene is yjiR [C]

Identifier: 13475938

GI number: 13475938

Start: 5887578

End: 5888963

Strand: Direct

Name: yjiR [C]

Synonym: mlr7131

Alternate gene names: 13475938

Gene position: 5887578-5888963 (Clockwise)

Preceding gene: 13475931

Following gene: 13475939

Centisome position: 83.68

GC content: 66.81

Gene sequence:

>1386_bases
ATGACATTGTGGCAACCCGACCCCGCGCTCATAAGGCGGCCAGCCTATCAATCGCTTGCCGACCAGTTCGCGCGCGCCAT
CCATGACGGGCGCCTTGCCAATGGCGCACGCCTGCCGACGCATCGCCGGCTGGCCGACGATCTCAATTTGTCGGTGCAGA
CCGTCAGCCGCGCCTATGAGGAATTGATCCGGCGCGGCCTGATCTCGGGCGAGATCGGCCGCGGCAGCTTTGTCCAGACG
CAGCGTCGCGAGCCGGAGCCGCCCTATCTGCCCGAGCGCCTGGGCGAGGTCATCGATCTCTCCATCCTGAAGCCGGTCTG
CGAGCCCATGCATCTGGAGAGGTTGAAGCAGGCACTGGGCTGGCTTGCCGAAAACCTGCCGTCGAGTTCAGCGTTGTCCT
TCCGGCCCAACATGGTGTTTCCGCGCCACCGTGCCGTGGCGGTCGAATGGCTGAAATTGTGCGGGCTCGACATTTCAGCC
CAGAACATCAGCCTGACCAATGGCGCCACCGCCGGCATGACGGTGGCGCTGATGAGCGTGGCGCCGCCTGGCTCGACCGT
TGCCACCGAGGCGATCGGCCACCACACGCTGGTGCCGCTGGCACGCTATCTCGGCTTCAACCTCCAAGGACTGCCGATCG
ATGATAACGGCCTGATCCCGGAGGCGCTGGACGAGGCCTGCCGTCTTTCCGACATCCGCGCGGTGTTCGTGCAGCCCTCG
GTGATCAACCCGACGGCAACGCTCATGGATGCCCAGCGGCGCGAACAAATCGCCGCGGTTGCGCGCAAGCATGACATCGC
CATCATCGAGAACGACGTGCTGGGCCCGCTGGTCGAGGATCGGCCGCCGCCGGTCGCCGCCTTTGCCCCGGAGCGCACGC
TCTACGTCACCTCTTTCACCAAGATCACCGTGCCCGGCCTGCGCATCGGCTATCTTGCCGCGCCCGACCGCTATGTCGCC
GCCGTCGCCAACCGGCATCTGGTGTCGAACTGGATGGCGACGCCGCTGGTTGCCGAGATCGCCACCAAATGGGTGACTGA
CGGCACGGCGATGGAGCTCGTCCTCTGGCAGCGCGCCGCATTGCGGCGGCGGCAGGATATCGCCGCCGAAGTGTTGGCCC
GCATCGACTACCGCGCCCGCCGCGACGGGCTGCATATCTGGCTGCAACTGCCCGACGACCGCGCCGAGGAGGGCTTTGTC
GCCCAGGCCCGGCTGCAGGGCGTGGCAATCGCGCCCGGCACATCCTTCCGCATTTCCGACGCGCCCTGGCATCCGGCGGT
GCGCATCTCGCTGGGCTCGACCACCGAAGGGGAACTGCGCGCCGGCCTCGGCGTTGTCACCAAGCTGCTGCTTGGCGATC
CGGAGCATTTGCTGCTCGCGATCTGA

Upstream 100 bases:

>100_bases
AGTTTCGCGGCAGTCATCAGGGCTCACTTTTTCGTCCACAGTACCATGATGGCGCATTATTTCGATTGTCAATTGCACTG
ATTTCGATCTCTAATAAGTC

Downstream 100 bases:

>100_bases
GCATGTCGCCCAAAGTGCGAAGCGGTTTCGGGACGATGGCATGCCCAAAAAACCAGCCACGATTGATCGGAAAATGTGCG
CAATCAGAATAATTGTCATG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTLWQPDPALIRRPAYQSLADQFARAIHDGRLANGARLPTHRRLADDLNLSVQTVSRAYEELIRRGLISGEIGRGSFVQT
QRREPEPPYLPERLGEVIDLSILKPVCEPMHLERLKQALGWLAENLPSSSALSFRPNMVFPRHRAVAVEWLKLCGLDISA
QNISLTNGATAGMTVALMSVAPPGSTVATEAIGHHTLVPLARYLGFNLQGLPIDDNGLIPEALDEACRLSDIRAVFVQPS
VINPTATLMDAQRREQIAAVARKHDIAIIENDVLGPLVEDRPPPVAAFAPERTLYVTSFTKITVPGLRIGYLAAPDRYVA
AVANRHLVSNWMATPLVAEIATKWVTDGTAMELVLWQRAALRRRQDIAAEVLARIDYRARRDGLHIWLQLPDDRAEEGFV
AQARLQGVAIAPGTSFRISDAPWHPAVRISLGSTTEGELRAGLGVVTKLLLGDPEHLLLAI

Sequences:

>Translated_461_residues
MTLWQPDPALIRRPAYQSLADQFARAIHDGRLANGARLPTHRRLADDLNLSVQTVSRAYEELIRRGLISGEIGRGSFVQT
QRREPEPPYLPERLGEVIDLSILKPVCEPMHLERLKQALGWLAENLPSSSALSFRPNMVFPRHRAVAVEWLKLCGLDISA
QNISLTNGATAGMTVALMSVAPPGSTVATEAIGHHTLVPLARYLGFNLQGLPIDDNGLIPEALDEACRLSDIRAVFVQPS
VINPTATLMDAQRREQIAAVARKHDIAIIENDVLGPLVEDRPPPVAAFAPERTLYVTSFTKITVPGLRIGYLAAPDRYVA
AVANRHLVSNWMATPLVAEIATKWVTDGTAMELVLWQRAALRRRQDIAAEVLARIDYRARRDGLHIWLQLPDDRAEEGFV
AQARLQGVAIAPGTSFRISDAPWHPAVRISLGSTTEGELRAGLGVVTKLLLGDPEHLLLAI
>Mature_460_residues
TLWQPDPALIRRPAYQSLADQFARAIHDGRLANGARLPTHRRLADDLNLSVQTVSRAYEELIRRGLISGEIGRGSFVQTQ
RREPEPPYLPERLGEVIDLSILKPVCEPMHLERLKQALGWLAENLPSSSALSFRPNMVFPRHRAVAVEWLKLCGLDISAQ
NISLTNGATAGMTVALMSVAPPGSTVATEAIGHHTLVPLARYLGFNLQGLPIDDNGLIPEALDEACRLSDIRAVFVQPSV
INPTATLMDAQRREQIAAVARKHDIAIIENDVLGPLVEDRPPPVAAFAPERTLYVTSFTKITVPGLRIGYLAAPDRYVAA
VANRHLVSNWMATPLVAEIATKWVTDGTAMELVLWQRAALRRRQDIAAEVLARIDYRARRDGLHIWLQLPDDRAEEGFVA
QARLQGVAIAPGTSFRISDAPWHPAVRISLGSTTEGELRAGLGVVTKLLLGDPEHLLLAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=314, Percent_Identity=20.7006369426752, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI33469970, Length=314, Percent_Identity=20.7006369426752, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1790797, Length=445, Percent_Identity=25.6179775280899, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787710, Length=434, Percent_Identity=24.6543778801843, Blast_Score=106, Evalue=4e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50604; Mature: 50473

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLWQPDPALIRRPAYQSLADQFARAIHDGRLANGARLPTHRRLADDLNLSVQTVSRAYE
CCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
ELIRRGLISGEIGRGSFVQTQRREPEPPYLPERLGEVIDLSILKPVCEPMHLERLKQALG
HHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
WLAENLPSSSALSFRPNMVFPRHRAVAVEWLKLCGLDISAQNISLTNGATAGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEE
APPGSTVATEAIGHHTLVPLARYLGFNLQGLPIDDNGLIPEALDEACRLSDIRAVFVQPS
CCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEECCC
VINPTATLMDAQRREQIAAVARKHDIAIIENDVLGPLVEDRPPPVAAFAPERTLYVTSFT
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCCCEEEECCCCEEEEEEEE
KITVPGLRIGYLAAPDRYVAAVANRHLVSNWMATPLVAEIATKWVTDGTAMELVLWQRAA
EEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRRRQDIAAEVLARIDYRARRDGLHIWLQLPDDRAEEGFVAQARLQGVAIAPGTSFRISD
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEHHHHCEEEECCCCCEEECC
APWHPAVRISLGSTTEGELRAGLGVVTKLLLGDPEHLLLAI
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
TLWQPDPALIRRPAYQSLADQFARAIHDGRLANGARLPTHRRLADDLNLSVQTVSRAYE
CCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
ELIRRGLISGEIGRGSFVQTQRREPEPPYLPERLGEVIDLSILKPVCEPMHLERLKQALG
HHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
WLAENLPSSSALSFRPNMVFPRHRAVAVEWLKLCGLDISAQNISLTNGATAGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEE
APPGSTVATEAIGHHTLVPLARYLGFNLQGLPIDDNGLIPEALDEACRLSDIRAVFVQPS
CCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEECCC
VINPTATLMDAQRREQIAAVARKHDIAIIENDVLGPLVEDRPPPVAAFAPERTLYVTSFT
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCCCEEEECCCCEEEEEEEE
KITVPGLRIGYLAAPDRYVAAVANRHLVSNWMATPLVAEIATKWVTDGTAMELVLWQRAA
EEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRRRQDIAAEVLARIDYRARRDGLHIWLQLPDDRAEEGFVAQARLQGVAIAPGTSFRISD
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEHHHHCEEEECCCCCEEECC
APWHPAVRISLGSTTEGELRAGLGVVTKLLLGDPEHLLLAI
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]