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The map label for this gene is soxB [H]

Identifier: 13475930

GI number: 13475930

Start: 5876768

End: 5878063

Strand: Direct

Name: soxB [H]

Synonym: mlr7120

Alternate gene names: 13475930

Gene position: 5876768-5878063 (Clockwise)

Preceding gene: 13475927

Following gene: 13475931

Centisome position: 83.52

GC content: 64.97

Gene sequence:

>1296_bases
TTGCCGAAGGCTTCGGAGGTTGTGGTCATCGGCGGCGGCGTCATCGGCGTGACCACGGCTTTGTTCCTGGCGCGGCGCAA
CATTTCGGTGACATTGCTGGAAAAGGGCCGCATCGCCGGTGAGCAATCGTCGCGGAACTGGGGCTGGATCCGCCAGCAGG
GCCGTGATGCCGACGAACTCCCTGTTGTCATCGAAGCGCAGCGCCTCTGGCGTCAACTGGCCGAGGAATGCGGCGAGGAC
ATCGGGCTGAGGCAGACAGGCGTCACCTATCTTGCGCGAACCGACAAAGAGATGGCCGGCTTCGCGAAGTTCCTGAAGAT
CGCCCAGATACACGGCGTCGACACGCGTCTCCTCGACCAGGGCGAGACGGCCAAGCTGATCCCGGCCATGTCGCGCTCTT
TCAAGGGTGCGATGACCACCCCATCGGACATGCGCGCCGAGCCATGGGTCGCGGTTCCCGCGCTTGCCCGCCTGGCCGCC
CGGGAGGGCGTCACCGTCATCGAGAATTGTGCAGCGCGCAAGCTCGACATATCGGCTGGACGCGTTAGCGGGGTCTGGAC
CGAACTGGGCCGTATCGCCACCTCGAGCGCGGTCGTCGCGAGCGGTGCGTGGACGTCGCTCTTCCTGCGCACCCACGGCG
TCTCCATTCCGCAGCTCAGCGTCAGGGCGACCGTCGCCGCGACCGGACCCATGCCCGAAATCCATTCTGGTGCCGTGGCC
GACGACCATATCGCATTCCGGCGTAGGCAGGATGGCGGCTACACGCTGGCATCGGGAGGCACCAGCCAGTTGTATGTCGG
GCCTGACGCCTTTCGTCACGCGACCAAATTTGTTCCTGCCCTGGTGGCGAATCCTTTTGGCACCTCCTACCTGCCGGCGG
CGCCGCGCGGCTATCCGGACGGCTGGTCAACCCCACGCCGATGGAACGCGGACGAGGAAAGCCCCTTCGAACGGATGCGC
ATCCTCAACCCCGCCCCCAAAGCCTCGGCGTTGCGCGATATCGAGCGCGAATTCACGGCACTTTTCCCACAGTTCAAGAC
GGTGCCGATCAAGGCGAGCTGGGCGGGCATGATCGATGCGATGCCGGATGTGGTGCCGGTCGTTGATCGCGCCGCCGAAA
TTCCGGGTCTCGTTGTTGCCACCGGGATGAGCGGTCACGGCTTCGGCATCGGACCCGGAATGGGCCGCGTCGTGTCCGAC
CTCGTCCAGGGAAACGAGATCGGGCATGATCTTCACAGGTTCCGTCAATCCCGCTTCAGCGACGGCAGCCCGATCAAGCT
GGGACCCAGCCTTTAG

Upstream 100 bases:

>100_bases
CGGCAGCGAGGGCCGACGCCGCCGTCAATAGCAAGAAGGGCAGTCTTCCTTGACAAGTTTTCCCTTTACCGAAGCCATGC
CGATCCAGTTTCAAGCACCG

Downstream 100 bases:

>100_bases
ATCGGGCGTCGGACGTCACGGGCCTCATCGGCGGCGCCGTCATCGGCAAGATCGTGTCGCAACTCGCCGCCGGTTTGCCG
CCAGTGATCGATCTGACGCC

Product: AgaE protein, conversion of agropinic acid to mannopinic acid

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MPKASEVVVIGGGVIGVTTALFLARRNISVTLLEKGRIAGEQSSRNWGWIRQQGRDADELPVVIEAQRLWRQLAEECGED
IGLRQTGVTYLARTDKEMAGFAKFLKIAQIHGVDTRLLDQGETAKLIPAMSRSFKGAMTTPSDMRAEPWVAVPALARLAA
REGVTVIENCAARKLDISAGRVSGVWTELGRIATSSAVVASGAWTSLFLRTHGVSIPQLSVRATVAATGPMPEIHSGAVA
DDHIAFRRRQDGGYTLASGGTSQLYVGPDAFRHATKFVPALVANPFGTSYLPAAPRGYPDGWSTPRRWNADEESPFERMR
ILNPAPKASALRDIEREFTALFPQFKTVPIKASWAGMIDAMPDVVPVVDRAAEIPGLVVATGMSGHGFGIGPGMGRVVSD
LVQGNEIGHDLHRFRQSRFSDGSPIKLGPSL

Sequences:

>Translated_431_residues
MPKASEVVVIGGGVIGVTTALFLARRNISVTLLEKGRIAGEQSSRNWGWIRQQGRDADELPVVIEAQRLWRQLAEECGED
IGLRQTGVTYLARTDKEMAGFAKFLKIAQIHGVDTRLLDQGETAKLIPAMSRSFKGAMTTPSDMRAEPWVAVPALARLAA
REGVTVIENCAARKLDISAGRVSGVWTELGRIATSSAVVASGAWTSLFLRTHGVSIPQLSVRATVAATGPMPEIHSGAVA
DDHIAFRRRQDGGYTLASGGTSQLYVGPDAFRHATKFVPALVANPFGTSYLPAAPRGYPDGWSTPRRWNADEESPFERMR
ILNPAPKASALRDIEREFTALFPQFKTVPIKASWAGMIDAMPDVVPVVDRAAEIPGLVVATGMSGHGFGIGPGMGRVVSD
LVQGNEIGHDLHRFRQSRFSDGSPIKLGPSL
>Mature_430_residues
PKASEVVVIGGGVIGVTTALFLARRNISVTLLEKGRIAGEQSSRNWGWIRQQGRDADELPVVIEAQRLWRQLAEECGEDI
GLRQTGVTYLARTDKEMAGFAKFLKIAQIHGVDTRLLDQGETAKLIPAMSRSFKGAMTTPSDMRAEPWVAVPALARLAAR
EGVTVIENCAARKLDISAGRVSGVWTELGRIATSSAVVASGAWTSLFLRTHGVSIPQLSVRATVAATGPMPEIHSGAVAD
DHIAFRRRQDGGYTLASGGTSQLYVGPDAFRHATKFVPALVANPFGTSYLPAAPRGYPDGWSTPRRWNADEESPFERMRI
LNPAPKASALRDIEREFTALFPQFKTVPIKASWAGMIDAMPDVVPVVDRAAEIPGLVVATGMSGHGFGIGPGMGRVVSDL
VQGNEIGHDLHRFRQSRFSDGSPIKLGPSL

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=268, Percent_Identity=29.1044776119403, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI21361378, Length=268, Percent_Identity=29.1044776119403, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI194306651, Length=269, Percent_Identity=25.6505576208178, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI20130091, Length=267, Percent_Identity=28.8389513108614, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571104, Length=428, Percent_Identity=25, Blast_Score=85, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 46368; Mature: 46236

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKASEVVVIGGGVIGVTTALFLARRNISVTLLEKGRIAGEQSSRNWGWIRQQGRDADEL
CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCC
PVVIEAQRLWRQLAEECGEDIGLRQTGVTYLARTDKEMAGFAKFLKIAQIHGVDTRLLDQ
CEEEEHHHHHHHHHHHHCHHCCCCHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHCC
GETAKLIPAMSRSFKGAMTTPSDMRAEPWVAVPALARLAAREGVTVIENCAARKLDISAG
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCEEECCCC
RVSGVWTELGRIATSSAVVASGAWTSLFLRTHGVSIPQLSVRATVAATGPMPEIHSGAVA
CHHHHHHHHHHHHHCCHHEECCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
DDHIAFRRRQDGGYTLASGGTSQLYVGPDAFRHATKFVPALVANPFGTSYLPAAPRGYPD
CCHHHHEEECCCCEEEECCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GWSTPRRWNADEESPFERMRILNPAPKASALRDIEREFTALFPQFKTVPIKASWAGMIDA
CCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHC
MPDVVPVVDRAAEIPGLVVATGMSGHGFGIGPGMGRVVSDLVQGNEIGHDLHRFRQSRFS
CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCC
DGSPIKLGPSL
CCCCEECCCCC
>Mature Secondary Structure 
PKASEVVVIGGGVIGVTTALFLARRNISVTLLEKGRIAGEQSSRNWGWIRQQGRDADEL
CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCC
PVVIEAQRLWRQLAEECGEDIGLRQTGVTYLARTDKEMAGFAKFLKIAQIHGVDTRLLDQ
CEEEEHHHHHHHHHHHHCHHCCCCHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHCC
GETAKLIPAMSRSFKGAMTTPSDMRAEPWVAVPALARLAAREGVTVIENCAARKLDISAG
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCEEECCCC
RVSGVWTELGRIATSSAVVASGAWTSLFLRTHGVSIPQLSVRATVAATGPMPEIHSGAVA
CHHHHHHHHHHHHHCCHHEECCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
DDHIAFRRRQDGGYTLASGGTSQLYVGPDAFRHATKFVPALVANPFGTSYLPAAPRGYPD
CCHHHHEEECCCCEEEECCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GWSTPRRWNADEESPFERMRILNPAPKASALRDIEREFTALFPQFKTVPIKASWAGMIDA
CCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHC
MPDVVPVVDRAAEIPGLVVATGMSGHGFGIGPGMGRVVSDLVQGNEIGHDLHRFRQSRFS
CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCC
DGSPIKLGPSL
CCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]