BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ucpA [C]

Identifier: 13475902

GI number: 13475902

Start: 5846530

End: 5847306

Strand: Reverse

Name: ucpA [C]

Synonym: mll7083

Alternate gene names: 13475902

Gene position: 5847306-5846530 (Counterclockwise)

Preceding gene: 13475903

Following gene: 13475901

Centisome position: 83.1

GC content: 63.06

Gene sequence:

>777_bases
ATGACAGGCAGGCTTCAGGGGAAGATCGCAATCGTCACCGGCGCCGGCCAGGGCATTGGTGCAGCCACTGCCCGGGCCTT
TGCGATGCAGGGAGCAAAGACCGTGATTGCCGAGCTCAATGCGGCAACCGGCAAGGCGGCCGCCGACGAATTGCGTGCCA
ACGGCGCCGACGCCCTTTTCGTCGAAACCGATGTCACCGACACAGCGGCAGTGGCCGACATGGTGGCGAAGACGATCGCG
GCCTATGGCGGCGTCAACGTGCTCGTCAACAATGCAGGCGCCAACGTCTTTTACGAGCCCTTGTCTATGCCGGACGCGGA
ATGGGACCGTTGCCTCAGGCTCGACCTCCAGGCCGCGTGGTCCTGTGCCAAGGCGGTGTTGCCGACGATGCTGGCGAACG
GTTCGGGATCGATCGTCAACATAGCCAGCTGCCACGCCTTCAAGATCATTCCCCACACATTTCCCTATCCGGTCGCCAAG
CATGCGCTTGTCGGCCTGACCCGCTCGCTCGGCATCGAATATGCGGCGCGCGGCATCCGCGTGAATGCGATCGCCCCCGG
CTACATCGAGACGCCGATCGCGGAAGCCTATTGGAACACGTTTCCGGACCCGGCCGAGGAGAAGCGGCGGGCCTACGACC
TTCATCCGCCCAAGCGCATTGGCCGGCCGGACGAAGTTGCAATGACGGCGGTTTTCCTCGCTTCGGACGAAGCGCCGTTC
ATCAATGCCGAGACGATCACCATCGATGGTGGACGCTCGGTTCTCTACCATGACTGA

Upstream 100 bases:

>100_bases
TGAATGAAGATGTCATCGCGCGCCACCCCTTCAAGCAGGAAGTCCTGCATGCCCGCAACGCCGTCATGCCCGACGGCACC
GTGGTCGATTGGTGAGCGCC

Downstream 100 bases:

>100_bases
CAACCAAGCAGGGAGGATCCACATGAAAACGACGACAAAGGCTCTGGCAACAGTGGCGATATTGGCCGCCGGACTGATGG
CTGGCGCGGCAAGCGCCGAC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTGRLQGKIAIVTGAGQGIGAATARAFAMQGAKTVIAELNAATGKAAADELRANGADALFVETDVTDTAAVADMVAKTIA
AYGGVNVLVNNAGANVFYEPLSMPDAEWDRCLRLDLQAAWSCAKAVLPTMLANGSGSIVNIASCHAFKIIPHTFPYPVAK
HALVGLTRSLGIEYAARGIRVNAIAPGYIETPIAEAYWNTFPDPAEEKRRAYDLHPPKRIGRPDEVAMTAVFLASDEAPF
INAETITIDGGRSVLYHD

Sequences:

>Translated_258_residues
MTGRLQGKIAIVTGAGQGIGAATARAFAMQGAKTVIAELNAATGKAAADELRANGADALFVETDVTDTAAVADMVAKTIA
AYGGVNVLVNNAGANVFYEPLSMPDAEWDRCLRLDLQAAWSCAKAVLPTMLANGSGSIVNIASCHAFKIIPHTFPYPVAK
HALVGLTRSLGIEYAARGIRVNAIAPGYIETPIAEAYWNTFPDPAEEKRRAYDLHPPKRIGRPDEVAMTAVFLASDEAPF
INAETITIDGGRSVLYHD
>Mature_257_residues
TGRLQGKIAIVTGAGQGIGAATARAFAMQGAKTVIAELNAATGKAAADELRANGADALFVETDVTDTAAVADMVAKTIAA
YGGVNVLVNNAGANVFYEPLSMPDAEWDRCLRLDLQAAWSCAKAVLPTMLANGSGSIVNIASCHAFKIIPHTFPYPVAKH
ALVGLTRSLGIEYAARGIRVNAIAPGYIETPIAEAYWNTFPDPAEEKRRAYDLHPPKRIGRPDEVAMTAVFLASDEAPFI
NAETITIDGGRSVLYHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=6e-35,
Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=35.0393700787402, Blast_Score=143, Evalue=1e-34,
Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=32.295719844358, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=30.9803921568627, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=32.8063241106719, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=33.0508474576271, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI31542939, Length=265, Percent_Identity=30.188679245283, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.8548387096774, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=35.2941176470588, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=27.5862068965517, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI33667109, Length=225, Percent_Identity=29.7777777777778, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=30.6201550387597, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=30.3191489361702, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=28.4584980237154, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI142976729, Length=188, Percent_Identity=29.7872340425532, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=33.1395348837209, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=26.6129032258064, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=31.1557788944724, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI302344755, Length=107, Percent_Identity=40.1869158878505, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=31.6326530612245, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=32.6424870466321, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=28.0632411067194, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI40807363, Length=196, Percent_Identity=29.5918367346939, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=27.5510204081633, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4502601, Length=144, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI25282469, Length=214, Percent_Identity=27.5700934579439, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=26.4248704663212, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI7705855, Length=208, Percent_Identity=25.9615384615385, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI186928839, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=39.2156862745098, Blast_Score=163, Evalue=8e-42,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=36.5461847389558, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=33.4677419354839, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=33.2, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=31.6, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=30.8, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786812, Length=265, Percent_Identity=30.5660377358491, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=32.4, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=29.2307692307692, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=28.968253968254, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787820, Length=185, Percent_Identity=29.1891891891892, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=26.6666666666667, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=35.6, Blast_Score=143, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=32.2709163346614, Blast_Score=138, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=33.9483394833948, Blast_Score=132, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.6612903225806, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=30.4832713754647, Blast_Score=117, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17551412, Length=278, Percent_Identity=31.294964028777, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17562904, Length=278, Percent_Identity=32.3741007194245, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=278, Percent_Identity=30.2158273381295, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=29.6875, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=31.5985130111524, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17560332, Length=276, Percent_Identity=31.8840579710145, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=30, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=275, Percent_Identity=32.3636363636364, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=264, Percent_Identity=31.8181818181818, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=29.1666666666667, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=29.368029739777, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=29.5880149812734, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=28.7822878228782, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=273, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=27.4900398406374, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=27.3809523809524, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=27.8810408921933, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=28.6764705882353, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=27.8195488721804, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=282, Percent_Identity=29.7872340425532, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=29.5546558704453, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=29.7435897435897, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=28.2258064516129, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=31.0344827586207, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI193203117, Length=204, Percent_Identity=28.921568627451, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI193203115, Length=203, Percent_Identity=29.064039408867, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=28.2722513089005, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=27.6041666666667, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=223, Percent_Identity=28.2511210762332, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=31.4720812182741, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=25.4980079681275, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=261, Percent_Identity=24.904214559387, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=35.4838709677419, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=31.7269076305221, Blast_Score=120, Evalue=6e-28,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=32.421875, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=33.0708661417323, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.5396825396825, Blast_Score=117, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=31.1284046692607, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=29.277566539924, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=28.0612244897959, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=30.9803921568627, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=31.7708333333333, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=29.7619047619048, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24640492, Length=203, Percent_Identity=25.615763546798, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584744, Length=192, Percent_Identity=26.5625, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=26.5625, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641232, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI161076933, Length=207, Percent_Identity=26.5700483091787, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584748, Length=207, Percent_Identity=26.5700483091787, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355631, Length=194, Percent_Identity=27.319587628866, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=27.1794871794872, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27213; Mature: 27082

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGRLQGKIAIVTGAGQGIGAATARAFAMQGAKTVIAELNAATGKAAADELRANGADALF
CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEE
VETDVTDTAAVADMVAKTIAAYGGVNVLVNNAGANVFYEPLSMPDAEWDRCLRLDLQAAW
EECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHH
SCAKAVLPTMLANGSGSIVNIASCHAFKIIPHTFPYPVAKHALVGLTRSLGIEYAARGIR
HHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHCCEE
VNAIAPGYIETPIAEAYWNTFPDPAEEKRRAYDLHPPKRIGRPDEVAMTAVFLASDEAPF
EEEECCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCHHHCCCCCHHEEEEEEEECCCCCE
INAETITIDGGRSVLYHD
ECCEEEEEECCCEEEECC
>Mature Secondary Structure 
TGRLQGKIAIVTGAGQGIGAATARAFAMQGAKTVIAELNAATGKAAADELRANGADALF
CCCCCEEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEE
VETDVTDTAAVADMVAKTIAAYGGVNVLVNNAGANVFYEPLSMPDAEWDRCLRLDLQAAW
EECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHH
SCAKAVLPTMLANGSGSIVNIASCHAFKIIPHTFPYPVAKHALVGLTRSLGIEYAARGIR
HHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHCCEE
VNAIAPGYIETPIAEAYWNTFPDPAEEKRRAYDLHPPKRIGRPDEVAMTAVFLASDEAPF
EEEECCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCHHHCCCCCHHEEEEEEEECCCCCE
INAETITIDGGRSVLYHD
ECCEEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550425; 10360571 [H]