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The map label for this gene is trbI [H]

Identifier: 13475788

GI number: 13475788

Start: 5717167

End: 5717682

Strand: Direct

Name: trbI [H]

Synonym: mlr6955

Alternate gene names: 13475788

Gene position: 5717167-5717682 (Clockwise)

Preceding gene: 13475785

Following gene: 13475789

Centisome position: 81.26

GC content: 61.43

Gene sequence:

>516_bases
GTGAGGAAAATAGCTTATATAGTAGCTGTTTTCAAGGGTGTGATGACCGAAAATGTCTATGACAGTCCCACGGGTCGCTC
GCTGCTGATCCCGCAAGGTACGCGTGTCATTGGCCAGTACGACAATGGGGTCGGCTTCGGCCAGCGTCGCGTGCTGCTCG
TCTGGAGCAGGCTGGTCTTTCCCAACGGACGCTCCATTGTTCTTGAACGCCAGCCTGGCACTGACGCCCAAGGCTATGCC
GGCCTTGAGGACGGCGTGGACTACCATTGGGGTGAACTGTTCAACGCGGCCGCACTCACCACCATCCTCAGCGTTGGCGC
GGAGGCCGGCTCGTCCGGCCAGGAAAGTGACATCGTGCGCGCCTTACGCGGCGGCGCCTCCGACAGCCTCAGCCAGGTGG
GCCAGCAGATCGTCCAGCGCCAACTCAACATCGCACCGACGCTGACGATACGGCCGGGCGTCAATGTGCGTGTCGTCGTT
ACGCGCGATCTCATGCTCGAACCCTACGGAGGCTGA

Upstream 100 bases:

>100_bases
CCGTGTCAGCTTGCGCTGCTTTCTGGCATTCTTGATCTCATTGCCAAGATCGTTCAGATCGATCATTTTTCGCCTCACAA
ATTAGCTTTTTCGAGCTTTT

Downstream 100 bases:

>100_bases
AAATGGCCAAGCTGAAACTCGGTCCGATTGCAGACGACAAGCCGGTTAAGGTCACAGTGGAACTGCCGGCGCCGCTGCAC
CGCGATCTGTCCAGATATGC

Product: conjugal transfer protein TRBI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYA
GLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVV
TRDLMLEPYGG

Sequences:

>Translated_171_residues
MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYA
GLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVV
TRDLMLEPYGG
>Mature_171_residues
MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYA
GLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVV
TRDLMLEPYGG

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 18431; Mature: 18431

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVF
CCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCHHHEEEEHHHHC
PNGRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVR
CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPYGG
HHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECEEECCCCC
>Mature Secondary Structure
MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVF
CCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCHHHEEEEHHHHC
PNGRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVR
CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPYGG
HHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]