Click here to switch to the map view.

The map label for this gene is lldR [H]

Identifier: 13475721

GI number: 13475721

Start: 5648147

End: 5648899

Strand: Reverse

Name: lldR [H]

Synonym: mll6865

Alternate gene names: 13475721

Gene position: 5648899-5648147 (Counterclockwise)

Preceding gene: 13475723

Following gene: 13475720

Centisome position: 80.28

GC content: 60.69

Gene sequence:

>753_bases
GTGGCGGAAGATGCGGGAGTCAGCAGTTCAGCCGTCGACCAGACCGTGCGGCAAATCCTCGACCTCATTCGAAATCGCGC
CATGTCCCTCGGCGACGTCCTGCCCACCGAACGCGAGCTTGGCGAACTGTTCGGCGCCAGCCGCAACACGATACGCGAAG
CGCTGCGCACCATTCGCACCTATGGTCTGATCGACCCCAAGCCGCGCGTCGGCGCGGTGCTGGCCGATCGCCATGATATC
GCGATCCAGAACTTCTTCGCCGCCCAGATGGATATTTCGAGAACCTCCTTTCACGACATACAGGGGTTTCGCCGCATCAT
TGAAGTGAGCGTCGGCGACCACATCATTCTCAATGCCAGCGCCGCCGAACTCGACGCCCTGGACGAGGTCAACGGACTGA
TCGAGACCAGCAAGGATGTCCAGGAAGCCGCACAGCGCGATTTCGATTTCCACATGGCGCTGATGAAGCTCGCCGACAAC
CGCATGCTGGTGCAGACCTACCAGTTCCTGTCGCCGGTCATCCTGCACATCATGACAGTCGGCAAATCGATTCGGCCGGT
GTTGAGCGAAACACGCCACGCCCATGGCGAGATCATCGCCGCGCTTCGCGCGCGCGACCGCATTGCCTACAGCTATTTGA
TGAGCCGGCATCTCGATTTCGGGCTGCGCTTCCTTCCCGACGACCTCGAAAACGCACGGACCTTGCCGGCAGTGCCGGGC
CCGACTTCTTCCAAGGATTTGCACAATGTCTGA

Upstream 100 bases:

>100_bases
GCTGCATTCTGGCCTTTTACGACCCACCAATTGATTTCCTATTCGATCGACACTATCCTTGGTCCAACAAATAGAAAGGA
GACAGCCCTTGGAGCAAGAC

Downstream 100 bases:

>100_bases
CTTTGAAAATAAGGTCGCGTTGATCACAGGCACGACCGGCATCGCGCTCGCCACCGCAAGACGGCTGGCGCAAGGAGGTG
CCGCGATCATCGCCTGCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAEDAGVSSSAVDQTVRQILDLIRNRAMSLGDVLPTERELGELFGASRNTIREALRTIRTYGLIDPKPRVGAVLADRHDI
AIQNFFAAQMDISRTSFHDIQGFRRIIEVSVGDHIILNASAAELDALDEVNGLIETSKDVQEAAQRDFDFHMALMKLADN
RMLVQTYQFLSPVILHIMTVGKSIRPVLSETRHAHGEIIAALRARDRIAYSYLMSRHLDFGLRFLPDDLENARTLPAVPG
PTSSKDLHNV

Sequences:

>Translated_250_residues
MAEDAGVSSSAVDQTVRQILDLIRNRAMSLGDVLPTERELGELFGASRNTIREALRTIRTYGLIDPKPRVGAVLADRHDI
AIQNFFAAQMDISRTSFHDIQGFRRIIEVSVGDHIILNASAAELDALDEVNGLIETSKDVQEAAQRDFDFHMALMKLADN
RMLVQTYQFLSPVILHIMTVGKSIRPVLSETRHAHGEIIAALRARDRIAYSYLMSRHLDFGLRFLPDDLENARTLPAVPG
PTSSKDLHNV
>Mature_249_residues
AEDAGVSSSAVDQTVRQILDLIRNRAMSLGDVLPTERELGELFGASRNTIREALRTIRTYGLIDPKPRVGAVLADRHDIA
IQNFFAAQMDISRTSFHDIQGFRRIIEVSVGDHIILNASAAELDALDEVNGLIETSKDVQEAAQRDFDFHMALMKLADNR
MLVQTYQFLSPVILHIMTVGKSIRPVLSETRHAHGEIIAALRARDRIAYSYLMSRHLDFGLRFLPDDLENARTLPAVPGP
TSSKDLHNV

Specific function: May be a regulatory protein for the LCT genes [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=241, Percent_Identity=27.8008298755187, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27883; Mature: 27752

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEDAGVSSSAVDQTVRQILDLIRNRAMSLGDVLPTERELGELFGASRNTIREALRTIRT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
YGLIDPKPRVGAVLADRHDIAIQNFFAAQMDISRTSFHDIQGFRRIIEVSVGDHIILNAS
HCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECC
AAELDALDEVNGLIETSKDVQEAAQRDFDFHMALMKLADNRMLVQTYQFLSPVILHIMTV
HHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
GKSIRPVLSETRHAHGEIIAALRARDRIAYSYLMSRHLDFGLRFLPDDLENARTLPAVPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCC
PTSSKDLHNV
CCCCCCCCCC
>Mature Secondary Structure 
AEDAGVSSSAVDQTVRQILDLIRNRAMSLGDVLPTERELGELFGASRNTIREALRTIRT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
YGLIDPKPRVGAVLADRHDIAIQNFFAAQMDISRTSFHDIQGFRRIIEVSVGDHIILNAS
HCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECC
AAELDALDEVNGLIETSKDVQEAAQRDFDFHMALMKLADNRMLVQTYQFLSPVILHIMTV
HHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
GKSIRPVLSETRHAHGEIIAALRARDRIAYSYLMSRHLDFGLRFLPDDLENARTLPAVPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCC
PTSSKDLHNV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407843; 8041620; 9278503 [H]