BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ucpA [C]

Identifier: 13475720

GI number: 13475720

Start: 5647369

End: 5648154

Strand: Reverse

Name: ucpA [C]

Synonym: mll6862

Alternate gene names: 13475720

Gene position: 5648154-5647369 (Counterclockwise)

Preceding gene: 13475721

Following gene: 13475717

Centisome position: 80.27

GC content: 65.01

Gene sequence:

>786_bases
ATGTCTGACTTTGAAAATAAGGTCGCGTTGATCACAGGCACGACCGGCATCGCGCTCGCCACCGCAAGACGGCTGGCGCA
AGGAGGTGCCGCGATCATCGCCTGCGGCATCGACCGGGCAGCCAATGCCGCCATGCAGGAGAGCCTCGCCAAGGCCGGAG
CGGATGCGCTGGTGCAAACAGTCGACGTGTCGATTTCCGATCAGGTGCGCGACGCGGTCGTGGCCGGCGTCGCGAAATTC
GGCGGCATCGACGTCATCGTCAATTCCGCCGCGGTCCATCCCTACGGAACCGCGACGACGACCGATTGGGAAACCTGGAA
CCGGGCGATGTCGGTCAATGTCGGATCGATCTACCTGACCGCCCACTTCGGCATTCCGGAAATGATCAAGCGCGGCGGCG
GCGCCATCGTCAACGTCGCCTCGGTACAAGGCTTCGCCTGCCAGCAGAACGTCGCCGCCTATGCCACGACCAAGGGCGCC
ATCCATACGCTGACACGCTCGCTGGCGCTCGACTACGCGGCAGCAGGCATAAGGGTGAATTCGGTGAGCCCGGGCTCGAT
CCGCACGCCGATCCTCGAGAAGGCCGCGCGCGGCGACCACGGCAGCGACGCCGATGTCGAGGAAGCTTACAAGCGCTTCG
GCGCGGCCCATCCGCTTGGCCGCATCGGCGAGCCGGAGGAAGTGGCTGAGTTCATCGCTTTCCTGTGCTCGTCAAAAGCC
AGCTTCTGCACCGGCGCCGACTACAAGATCGACGGCGGCCTGACCGCCGGCATCGGCGTGAGGTAG

Upstream 100 bases:

>100_bases
CGGCATCTCGATTTCGGGCTGCGCTTCCTTCCCGACGACCTCGAAAACGCACGGACCTTGCCGGCAGTGCCGGGCCCGAC
TTCTTCCAAGGATTTGCACA

Downstream 100 bases:

>100_bases
AGCCGCGGCGATCGGCTTGACCCTCAGGGGTTTTGGGAGCGCAATGTCCGCAAGGTGATCGAGTAGCGATGCTCGGCAAG
CGGCGGGATGCTGTGCTCCC

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSDFENKVALITGTTGIALATARRLAQGGAAIIACGIDRAANAAMQESLAKAGADALVQTVDVSISDQVRDAVVAGVAKF
GGIDVIVNSAAVHPYGTATTTDWETWNRAMSVNVGSIYLTAHFGIPEMIKRGGGAIVNVASVQGFACQQNVAAYATTKGA
IHTLTRSLALDYAAAGIRVNSVSPGSIRTPILEKAARGDHGSDADVEEAYKRFGAAHPLGRIGEPEEVAEFIAFLCSSKA
SFCTGADYKIDGGLTAGIGVR

Sequences:

>Translated_261_residues
MSDFENKVALITGTTGIALATARRLAQGGAAIIACGIDRAANAAMQESLAKAGADALVQTVDVSISDQVRDAVVAGVAKF
GGIDVIVNSAAVHPYGTATTTDWETWNRAMSVNVGSIYLTAHFGIPEMIKRGGGAIVNVASVQGFACQQNVAAYATTKGA
IHTLTRSLALDYAAAGIRVNSVSPGSIRTPILEKAARGDHGSDADVEEAYKRFGAAHPLGRIGEPEEVAEFIAFLCSSKA
SFCTGADYKIDGGLTAGIGVR
>Mature_260_residues
SDFENKVALITGTTGIALATARRLAQGGAAIIACGIDRAANAAMQESLAKAGADALVQTVDVSISDQVRDAVVAGVAKFG
GIDVIVNSAAVHPYGTATTTDWETWNRAMSVNVGSIYLTAHFGIPEMIKRGGGAIVNVASVQGFACQQNVAAYATTKGAI
HTLTRSLALDYAAAGIRVNSVSPGSIRTPILEKAARGDHGSDADVEEAYKRFGAAHPLGRIGEPEEVAEFIAFLCSSKAS
FCTGADYKIDGGLTAGIGVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=34.765625, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI59889578, Length=240, Percent_Identity=31.25, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=35.0393700787402, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=31.7829457364341, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI66933014, Length=235, Percent_Identity=32.7659574468085, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=33.8709677419355, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.0483870967742, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=28.4615384615385, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI15277342, Length=268, Percent_Identity=28.7313432835821, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=35.2331606217617, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=29.7709923664122, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=258, Percent_Identity=29.0697674418605, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI10190704, Length=263, Percent_Identity=28.8973384030418, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI31542939, Length=227, Percent_Identity=28.6343612334802, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=36.8932038834951, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4503301, Length=257, Percent_Identity=26.4591439688716, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=27.8625954198473, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=31.9796954314721, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=35.408560311284, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=31.640625, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787335, Length=255, Percent_Identity=30.1960784313725, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI2367175, Length=261, Percent_Identity=37.1647509578544, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=29.8039215686275, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790717, Length=260, Percent_Identity=30.7692307692308, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=29.4820717131474, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787905, Length=254, Percent_Identity=27.5590551181102, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367365, Length=265, Percent_Identity=32.0754716981132, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=26.8482490272374, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=24.3027888446215, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787820, Length=239, Percent_Identity=25.9414225941423, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789057, Length=266, Percent_Identity=29.6992481203008, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=35.0597609561753, Blast_Score=123, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17560676, Length=260, Percent_Identity=30.7692307692308, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=36.7588932806324, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=32.6923076923077, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=275, Percent_Identity=32, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=276, Percent_Identity=32.9710144927536, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=277, Percent_Identity=32.4909747292419, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=31.9852941176471, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=279, Percent_Identity=29.7491039426523, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=30.5343511450382, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=274, Percent_Identity=32.8467153284672, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=31.3725490196078, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=29.8892988929889, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=31.1111111111111, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=277, Percent_Identity=31.0469314079422, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=276, Percent_Identity=32.2463768115942, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=29.5620437956204, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=274, Percent_Identity=29.9270072992701, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=33.0882352941176, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=31.7343173431734, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=276, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=26.9076305220884, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=31.4393939393939, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=263, Percent_Identity=31.1787072243346, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=29.1828793774319, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=30.188679245283, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=26.2357414448669, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=280, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=40.7692307692308, Blast_Score=155, Evalue=3e-38,
Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=37.4517374517375, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=36.4341085271318, Blast_Score=135, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24644339, Length=271, Percent_Identity=37.6383763837638, Blast_Score=134, Evalue=4e-32,
Organism=Drosophila melanogaster, GI21355319, Length=261, Percent_Identity=32.5670498084291, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24644337, Length=173, Percent_Identity=43.3526011560694, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=35.6862745098039, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=31.9066147859922, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI17737361, Length=271, Percent_Identity=31.3653136531365, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21358495, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357673, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26831; Mature: 26699

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFENKVALITGTTGIALATARRLAQGGAAIIACGIDRAANAAMQESLAKAGADALVQT
CCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHH
VDVSISDQVRDAVVAGVAKFGGIDVIVNSAAVHPYGTATTTDWETWNRAMSVNVGSIYLT
HCCCHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCHHHHHHEEEEECCEEEEE
AHFGIPEMIKRGGGAIVNVASVQGFACQQNVAAYATTKGAIHTLTRSLALDYAAAGIRVN
EECCCHHHHHCCCCCEEEEECCCCCHHHCCCHHEEECCHHHHHHHHHHHHHHHHCCEEEE
SVSPGSIRTPILEKAARGDHGSDADVEEAYKRFGAAHPLGRIGEPEEVAEFIAFLCSSKA
CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
SFCTGADYKIDGGLTAGIGVR
CCCCCCCEEECCCEECCCCCC
>Mature Secondary Structure 
SDFENKVALITGTTGIALATARRLAQGGAAIIACGIDRAANAAMQESLAKAGADALVQT
CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHH
VDVSISDQVRDAVVAGVAKFGGIDVIVNSAAVHPYGTATTTDWETWNRAMSVNVGSIYLT
HCCCHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCHHHHHHEEEEECCEEEEE
AHFGIPEMIKRGGGAIVNVASVQGFACQQNVAAYATTKGAIHTLTRSLALDYAAAGIRVN
EECCCHHHHHCCCCCEEEEECCCCCHHHCCCHHEEECCHHHHHHHHHHHHHHHHCCEEEE
SVSPGSIRTPILEKAARGDHGSDADVEEAYKRFGAAHPLGRIGEPEEVAEFIAFLCSSKA
CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
SFCTGADYKIDGGLTAGIGVR
CCCCCCCEEECCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550425; 10360571 [H]