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The map label for this gene is ydhC [H]

Identifier: 13475662

GI number: 13475662

Start: 5586006

End: 5586677

Strand: Reverse

Name: ydhC [H]

Synonym: mll6786

Alternate gene names: 13475662

Gene position: 5586677-5586006 (Counterclockwise)

Preceding gene: 13475673

Following gene: 13475661

Centisome position: 79.4

GC content: 59.23

Gene sequence:

>672_bases
ATGCCCCCAGATTTGAATTTGCGAATTTCGCCACGGACCGTGCAACGGGAGACCGTCGACAAGTTACGGCTCGCGATCTT
CTCCGGGTTGTTTCAGCCGGGTAGCCGCCTCATCGAAAGTCAACTATGCACACAACTCGGCATCAGCCGCCCCTCGCTGA
GGGAGGCTTTGCGCAGTCTTGAGGCCGAGCGCCTGATCGAGATCGTGCCCAACCGCGGACCGTCGATACCGGCACTTTCG
TGGGAGGTGGCAACCGCCATCTACGAGGTTCGAGAGTTGCTGGAAGTCGAGGCAGCGGGACGATGCGCGCTAAGGATTTC
CCCGGAACAGTTGCGTGAACTCGAGAAATCGCTTTCCGCATTCGAAGAGGCGGCCTCCAGCAATGACAGCCTGGCGCAGG
TCATGACCGCCGCGGACTTCTATTCGATCATACTCGCCAATTGCGGCAATCCGATCCTGGAGGAAGTCCATCGCGGTCTG
GTAGCCAGGATCAGCTTCTTTCGAGGACGGTCGATGTCCCTGGAGGGCAGAGCACAAAGCAGCCTGGCGGAGATGAGGGA
GATATTCGAATCCATCGCCGCCGGCGACGAGAAAGCCGCCCGCAAAGCCTCGAAACAGCACGTCCTGAGGGCGAAAGCGG
CAGCGAAGATATCCATGGACAACGGGATTTGA

Upstream 100 bases:

>100_bases
AATCTTCATATTTGACAATCTGGCTATCCTGCTGTCAAATTTGCGCGGCGTGGCGTATGCTGCTTCAGTTTTGCGACTCA
AAGGCCATGAGACGTTACCG

Downstream 100 bases:

>100_bases
GGTCTTCGATGGACTGTCGTTCCGCCTGAAGACTCGAAGTCCTTCATGACGTTTCGGATCGGCCGAACGCGGATCCGTGC
GCGGGCCTTCTCCGTGTCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MPPDLNLRISPRTVQRETVDKLRLAIFSGLFQPGSRLIESQLCTQLGISRPSLREALRSLEAERLIEIVPNRGPSIPALS
WEVATAIYEVRELLEVEAAGRCALRISPEQLRELEKSLSAFEEAASSNDSLAQVMTAADFYSIILANCGNPILEEVHRGL
VARISFFRGRSMSLEGRAQSSLAEMREIFESIAAGDEKAARKASKQHVLRAKAAAKISMDNGI

Sequences:

>Translated_223_residues
MPPDLNLRISPRTVQRETVDKLRLAIFSGLFQPGSRLIESQLCTQLGISRPSLREALRSLEAERLIEIVPNRGPSIPALS
WEVATAIYEVRELLEVEAAGRCALRISPEQLRELEKSLSAFEEAASSNDSLAQVMTAADFYSIILANCGNPILEEVHRGL
VARISFFRGRSMSLEGRAQSSLAEMREIFESIAAGDEKAARKASKQHVLRAKAAAKISMDNGI
>Mature_222_residues
PPDLNLRISPRTVQRETVDKLRLAIFSGLFQPGSRLIESQLCTQLGISRPSLREALRSLEAERLIEIVPNRGPSIPALSW
EVATAIYEVRELLEVEAAGRCALRISPEQLRELEKSLSAFEEAASSNDSLAQVMTAADFYSIILANCGNPILEEVHRGLV
ARISFFRGRSMSLEGRAQSSLAEMREIFESIAAGDEKAARKASKQHVLRAKAAAKISMDNGI

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=200, Percent_Identity=28, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24546; Mature: 24414

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPDLNLRISPRTVQRETVDKLRLAIFSGLFQPGSRLIESQLCTQLGISRPSLREALRSL
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAERLIEIVPNRGPSIPALSWEVATAIYEVRELLEVEAAGRCALRISPEQLRELEKSLSA
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHH
FEEAASSNDSLAQVMTAADFYSIILANCGNPILEEVHRGLVARISFFRGRSMSLEGRAQS
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
SLAEMREIFESIAAGDEKAARKASKQHVLRAKAAAKISMDNGI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PPDLNLRISPRTVQRETVDKLRLAIFSGLFQPGSRLIESQLCTQLGISRPSLREALRSL
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAERLIEIVPNRGPSIPALSWEVATAIYEVRELLEVEAAGRCALRISPEQLRELEKSLSA
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHH
FEEAASSNDSLAQVMTAADFYSIILANCGNPILEEVHRGLVARISFFRGRSMSLEGRAQS
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
SLAEMREIFESIAAGDEKAARKASKQHVLRAKAAAKISMDNGI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]