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The map label for this gene is agmR [H]

Identifier: 13475642

GI number: 13475642

Start: 5562735

End: 5563412

Strand: Reverse

Name: agmR [H]

Synonym: mll6762

Alternate gene names: 13475642

Gene position: 5563412-5562735 (Counterclockwise)

Preceding gene: 13475643

Following gene: 13475640

Centisome position: 79.07

GC content: 56.49

Gene sequence:

>678_bases
ATGTATCGGATCGTCATCGCCGACGATCACGGCTTGTATCGGCGCGGCCTTCGGCTGGCACTTATGGCTGGAATTCCAAG
CGTCGAAATATTCGAGGCTGCGTGTTTCGATGCTGTGGTCAATCTTCTAGAGGAGCAGGCATCCATCGATCTTGCGATCC
TCGACCTGAACATGCCTGGGCTGTTTAACCAGGAGGTGCTCAGCGACGTTCTCGCTGCGTATCCCGACACACGCTTTGCT
ATCGTTTCCGGGGACGATTCTCGCTCGGAGATCCTGACTGCTCTTTCGATCGGGCTTCACGGCTACATCGTCAAATCGCA
GAAAGACGAAGAAGTCGTGCTGGCGGTAAATGAGATCCTTGCGGGCCGGATCTATGTGCCAGCACTCTTGTCTCGAACGT
CTGCCGACCAGAGATCGTATGCCGCCCTGCCCTCGGCGAGAAATCCTATCCGTCAGCGCGTGGGCTCAAGCGATCTCGGC
AGACTGACATCGAGGCAAAGAGACGTCCTCAAGCTGATGGCGGAAGGGTACTCGAACAAGGAGATCGCCCGCAATCTGGA
TATTGCCGAAGCGACAACGAAAATCCATGCCGCCGCCATTCTGCGCGAGCTTGGGGTGCGGAACCGGACTGAAGCAGCCG
TTTTGCTGCAAACCTGGCTGTCGAGAAATGTGAGCTGA

Upstream 100 bases:

>100_bases
GGCCGCGACTTCAGGGATCACTGCGGTTACCATCATAGAGGAATGGGAGGTTCCAGCGGGTGTCCTCGTCGGGAACCGAG
TAACGGGTTGGGGTAGTTCA

Downstream 100 bases:

>100_bases
TGTTCGCCACCCGAAGCGGGTGCCGCTCGGGCCGGCATGCATGGAATAAACTTAAGCGCGTCACACCAGACCGGCGCGCT
TTGGGTCCTTGTTTCATGCA

Product: two component system response regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MYRIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPGLFNQEVLSDVLAAYPDTRFA
IVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEILAGRIYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLG
RLTSRQRDVLKLMAEGYSNKEIARNLDIAEATTKIHAAAILRELGVRNRTEAAVLLQTWLSRNVS

Sequences:

>Translated_225_residues
MYRIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPGLFNQEVLSDVLAAYPDTRFA
IVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEILAGRIYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLG
RLTSRQRDVLKLMAEGYSNKEIARNLDIAEATTKIHAAAILRELGVRNRTEAAVLLQTWLSRNVS
>Mature_225_residues
MYRIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPGLFNQEVLSDVLAAYPDTRFA
IVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEILAGRIYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLG
RLTSRQRDVLKLMAEGYSNKEIARNLDIAEATTKIHAAAILRELGVRNRTEAAVLLQTWLSRNVS

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=214, Percent_Identity=28.5046728971963, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788521, Length=215, Percent_Identity=31.6279069767442, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787473, Length=214, Percent_Identity=32.2429906542056, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24720; Mature: 24720

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPG
CEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
LFNQEVLSDVLAAYPDTRFAIVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEIL
CCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
AGRIYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLGRLTSRQRDVLKLMAEGYSNK
HCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
EIARNLDIAEATTKIHAAAILRELGVRNRTEAAVLLQTWLSRNVS
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYRIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPG
CEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
LFNQEVLSDVLAAYPDTRFAIVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEIL
CCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
AGRIYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLGRLTSRQRDVLKLMAEGYSNK
HCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
EIARNLDIAEATTKIHAAAILRELGVRNRTEAAVLLQTWLSRNVS
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]