Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 13475385

GI number: 13475385

Start: 5259357

End: 5260193

Strand: Direct

Name: araQ [H]

Synonym: mlr6438

Alternate gene names: 13475385

Gene position: 5259357-5260193 (Clockwise)

Preceding gene: 13475384

Following gene: 13475386

Centisome position: 74.75

GC content: 62.25

Gene sequence:

>837_bases
ATGAGTTCGCTCTCCTCCGCCCGCCTGAGGCGCAGCATCGCGCTGCATCTTTTCCTCACCCCGCTGGCGCTGATCTGGCT
GTTCCCGCTGTGGATGATGGTGGTGTTTTCGACCATGCCCGACAACGGCATATTCAGCCCCGGAATCGAGCTTTTGCCGC
ACGGCAATTTCGTCGACAATTTCAACAATCTGCAGCGTGACACCAATTTCGTCGGCGCCATCGGCATCTCCGTCTCGGTG
GCGGTGACCTACACCTTCCTGTCGGTGATGTTGACGTCGATGGCCGGCTGGGCGCTGGCGCGCTACCAGTTCTTCGGCAA
GGGCGTGGTGGTCGGCATCATCTTCGGCACCATCACGCTGCCCTATGCGGTGGTGCTGATCCCGCAATTCATCATGGTGG
CGCGCGACTTCCAGCTCGCCAACACCTGGGTGGCGTTGATCGTGCCGCCGCTGTTCAATTCGCTGGGCGTGCTCTTCATG
CGCCAGAGCTTCTCCATGATGCCGGACGACCTCTTCGACGCCGCCCGCGTCGAAGGCGTGAAGGAATGGCGCATTTTCCT
CTTCGTCGCGCTGCCGCTGGCGCGGCCGATGCTCGCCGCACTCGCCATCATCCTGTTCCTCGCCTCCTGGAACAATTATC
TCTGGCCGCTTTTGATCAACAGCCAGCCCGGTTCGATGACGGCGCCGGTGGCGCTCGGCACCCTGATCGGCCTCACCAAA
GTGTCGTGGGGCGGTATCATGGCAGGGGCCGTGATGCTCACCGTGCCGATGCTGATCGTCTTCGTGCTCCTGCAGCGCCA
TTTCATCGCCGGCATCGCCGCCGGCGCAGTCAAGTAA

Upstream 100 bases:

>100_bases
GGTCGCTCAATTTCGGCTATGCCTCGGCCGTTGCCTACACCATGGCGGCGCTGGCGATCGCGATCACGCTGGTGCAGCTG
TGGCTGACGAGGGAAAAGCA

Downstream 100 bases:

>100_bases
GAGGCAGCATGGCAACCGTTACGCTGAGCAATGTGGTCAAGCGCTTCGGCGTCTTCGAAGTCGTCCATGGCGCCAACATC
GACATCAAGCACGGCGAGTT

Product: ABC transporter sugar permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSSLSSARLRRSIALHLFLTPLALIWLFPLWMMVVFSTMPDNGIFSPGIELLPHGNFVDNFNNLQRDTNFVGAIGISVSV
AVTYTFLSVMLTSMAGWALARYQFFGKGVVVGIIFGTITLPYAVVLIPQFIMVARDFQLANTWVALIVPPLFNSLGVLFM
RQSFSMMPDDLFDAARVEGVKEWRIFLFVALPLARPMLAALAIILFLASWNNYLWPLLINSQPGSMTAPVALGTLIGLTK
VSWGGIMAGAVMLTVPMLIVFVLLQRHFIAGIAAGAVK

Sequences:

>Translated_278_residues
MSSLSSARLRRSIALHLFLTPLALIWLFPLWMMVVFSTMPDNGIFSPGIELLPHGNFVDNFNNLQRDTNFVGAIGISVSV
AVTYTFLSVMLTSMAGWALARYQFFGKGVVVGIIFGTITLPYAVVLIPQFIMVARDFQLANTWVALIVPPLFNSLGVLFM
RQSFSMMPDDLFDAARVEGVKEWRIFLFVALPLARPMLAALAIILFLASWNNYLWPLLINSQPGSMTAPVALGTLIGLTK
VSWGGIMAGAVMLTVPMLIVFVLLQRHFIAGIAAGAVK
>Mature_277_residues
SSLSSARLRRSIALHLFLTPLALIWLFPLWMMVVFSTMPDNGIFSPGIELLPHGNFVDNFNNLQRDTNFVGAIGISVSVA
VTYTFLSVMLTSMAGWALARYQFFGKGVVVGIIFGTITLPYAVVLIPQFIMVARDFQLANTWVALIVPPLFNSLGVLFMR
QSFSMMPDDLFDAARVEGVKEWRIFLFVALPLARPMLAALAIILFLASWNNYLWPLLINSQPGSMTAPVALGTLIGLTKV
SWGGIMAGAVMLTVPMLIVFVLLQRHFIAGIAAGAVK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=254, Percent_Identity=26.7716535433071, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787571, Length=280, Percent_Identity=26.0714285714286, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790464, Length=208, Percent_Identity=29.3269230769231, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30500; Mature: 30369

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLSSARLRRSIALHLFLTPLALIWLFPLWMMVVFSTMPDNGIFSPGIELLPHGNFVDN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHH
FNNLQRDTNFVGAIGISVSVAVTYTFLSVMLTSMAGWALARYQFFGKGVVVGIIFGTITL
HHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PYAVVLIPQFIMVARDFQLANTWVALIVPPLFNSLGVLFMRQSFSMMPDDLFDAARVEGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCH
KEWRIFLFVALPLARPMLAALAIILFLASWNNYLWPLLINSQPGSMTAPVALGTLIGLTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
VSWGGIMAGAVMLTVPMLIVFVLLQRHFIAGIAAGAVK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSLSSARLRRSIALHLFLTPLALIWLFPLWMMVVFSTMPDNGIFSPGIELLPHGNFVDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHH
FNNLQRDTNFVGAIGISVSVAVTYTFLSVMLTSMAGWALARYQFFGKGVVVGIIFGTITL
HHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PYAVVLIPQFIMVARDFQLANTWVALIVPPLFNSLGVLFMRQSFSMMPDDLFDAARVEGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCH
KEWRIFLFVALPLARPMLAALAIILFLASWNNYLWPLLINSQPGSMTAPVALGTLIGLTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
VSWGGIMAGAVMLTVPMLIVFVLLQRHFIAGIAAGAVK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]