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The map label for this gene is omp2b [H]

Identifier: 13475344

GI number: 13475344

Start: 5212167

End: 5213369

Strand: Reverse

Name: omp2b [H]

Synonym: mll6389

Alternate gene names: 13475344

Gene position: 5213369-5212167 (Counterclockwise)

Preceding gene: 13475346

Following gene: 13475340

Centisome position: 74.09

GC content: 56.11

Gene sequence:

>1203_bases
TTGACGTCCCCTTCTTTAATATTTGAACGGAGATCAAGAATGAACATCACGAGCCTCCTGCTCGGCTCAGCTGCGGCCCT
GATCGCCGTTTCCTGTGCCCGAGCCGCCGACGCCATCGTCCTGGCCGAGCCTGAGCCCGTTGAATACGTCAAGATCTGCG
GCGTTTACGGCGCTGGTTACTACTACATCCCCGGCACCGAGACCTGCCTGCGCATCGGCGGCTATGTCCGTTACGACATC
GGCCTCGGCGATGTCGTGTCGTATGACCAAGCTAGAACCACGGATGTGAAGACTGGCGAGGCCCAGGGCATATGGCAAAA
CCACACGCGCTTCACATTCAAAACTTGGACCGGGCAAGAGACCGAACTCGGTACATTGCAGACCTACATCGAGACCCGCA
TGAACTACGGCAAGCACACCGCCTATTCCGGTTCGGACAGTCCTCGATACCATGCCTTCAGCCAAGGCATCACGTTGACT
TTCGCCTGGGTTCAGCTTGGTGGCCTCCGAGTTGGCAAGGACTGGTCCGCCTTCGACATGTTTATTGGCTACGCGGGCGA
CGTGCTCAATCAGATGCTTATCCCGTACGGCGCCTTCGATACTAATGTGGTTCAGTACTACTTTGACGCCGGTAACGGCT
TTTCGGCTGTGGTTTCACTCGAAGAAGGCTCGGGCCTGGTCGGCACCATCGACAGCTACGTTCCGCACCTAGTCGGCGGA
GTGAAATACACACAACACTGGGGCGCGATCACCGGCGTTGTCGCTTATGATAGCAACTACGAATCGGTCGCGGGCAAGGT
CCGCATCGACGTCGATGTTACCGACCAACTCTCGCTATTCGGAATGTTCGGCTACGGCTCCAGCGGCAAGCTCAACGATG
ACGTCACTAACGCAATCGACGCTCATGGTCGCGGGTTCTACAAAAGTTGGGGCGGTAACTGGGCTTTCTGGGCCGGCGCC
ACTTACAAGCTCAATGAGACAACTTCGTTGAATCTTCAGCTCTCGGGTGATCAGCTCAGGAACTATGGTGTCGCTGCAAA
CGTCGCCTATACGTTTCTTGCAGATTTCACAATTACAGCCGAACTCGACTATGACCGCTACGGCGACTTCGCCGTCGGCA
AGGTCGACCCTTCCATTAGCTGGGCGAATGCCAACAAAAAGAGCAGTGTCGGCGGCATCCTCCGTTTCGAACGTTCATTC
TAA

Upstream 100 bases:

>100_bases
TTGTTGAATCATTATTATGACCCGTGCGTCATACTGCGATGGGCGCAGCGCGATGTGCATCGTTTTCGATTGTGGGGACA
GGAAGGGGCTGGCTCGTTCG

Downstream 100 bases:

>100_bases
CGGGAGGAAGAGCTTCATCTCGGTGCCTCAGGCGGCGAATGACGATTATGCGGGGGACCTGCCACGCCTGCGGCAGATAA
GCGCTGGCACGTTTGCAATC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTSPSLIFERRSRMNITSLLLGSAAALIAVSCARAADAIVLAEPEPVEYVKICGVYGAGYYYIPGTETCLRIGGYVRYDI
GLGDVVSYDQARTTDVKTGEAQGIWQNHTRFTFKTWTGQETELGTLQTYIETRMNYGKHTAYSGSDSPRYHAFSQGITLT
FAWVQLGGLRVGKDWSAFDMFIGYAGDVLNQMLIPYGAFDTNVVQYYFDAGNGFSAVVSLEEGSGLVGTIDSYVPHLVGG
VKYTQHWGAITGVVAYDSNYESVAGKVRIDVDVTDQLSLFGMFGYGSSGKLNDDVTNAIDAHGRGFYKSWGGNWAFWAGA
TYKLNETTSLNLQLSGDQLRNYGVAANVAYTFLADFTITAELDYDRYGDFAVGKVDPSISWANANKKSSVGGILRFERSF

Sequences:

>Translated_400_residues
MTSPSLIFERRSRMNITSLLLGSAAALIAVSCARAADAIVLAEPEPVEYVKICGVYGAGYYYIPGTETCLRIGGYVRYDI
GLGDVVSYDQARTTDVKTGEAQGIWQNHTRFTFKTWTGQETELGTLQTYIETRMNYGKHTAYSGSDSPRYHAFSQGITLT
FAWVQLGGLRVGKDWSAFDMFIGYAGDVLNQMLIPYGAFDTNVVQYYFDAGNGFSAVVSLEEGSGLVGTIDSYVPHLVGG
VKYTQHWGAITGVVAYDSNYESVAGKVRIDVDVTDQLSLFGMFGYGSSGKLNDDVTNAIDAHGRGFYKSWGGNWAFWAGA
TYKLNETTSLNLQLSGDQLRNYGVAANVAYTFLADFTITAELDYDRYGDFAVGKVDPSISWANANKKSSVGGILRFERSF
>Mature_399_residues
TSPSLIFERRSRMNITSLLLGSAAALIAVSCARAADAIVLAEPEPVEYVKICGVYGAGYYYIPGTETCLRIGGYVRYDIG
LGDVVSYDQARTTDVKTGEAQGIWQNHTRFTFKTWTGQETELGTLQTYIETRMNYGKHTAYSGSDSPRYHAFSQGITLTF
AWVQLGGLRVGKDWSAFDMFIGYAGDVLNQMLIPYGAFDTNVVQYYFDAGNGFSAVVSLEEGSGLVGTIDSYVPHLVGGV
KYTQHWGAITGVVAYDSNYESVAGKVRIDVDVTDQLSLFGMFGYGSSGKLNDDVTNAIDAHGRGFYKSWGGNWAFWAGAT
YKLNETTSLNLQLSGDQLRNYGVAANVAYTFLADFTITAELDYDRYGDFAVGKVDPSISWANANKKSSVGGILRFERSF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 43735; Mature: 43604

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPSLIFERRSRMNITSLLLGSAAALIAVSCARAADAIVLAEPEPVEYVKICGVYGAGY
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCE
YYIPGTETCLRIGGYVRYDIGLGDVVSYDQARTTDVKTGEAQGIWQNHTRFTFKTWTGQE
EEECCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCC
TELGTLQTYIETRMNYGKHTAYSGSDSPRYHAFSQGITLTFAWVQLGGLRVGKDWSAFDM
CCCHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCEEEEEEEEECCEEECCCCCHHHH
FIGYAGDVLNQMLIPYGAFDTNVVQYYFDAGNGFSAVVSLEEGSGLVGTIDSYVPHLVGG
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEHHHHHHHHHCC
VKYTQHWGAITGVVAYDSNYESVAGKVRIDVDVTDQLSLFGMFGYGSSGKLNDDVTNAID
CEEEECCCCEEEEEEECCCHHHCCEEEEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHH
AHGRGFYKSWGGNWAFWAGATYKLNETTSLNLQLSGDQLRNYGVAANVAYTFLADFTITA
HCCCCCCCCCCCCEEEEECEEEEECCCEEEEEEECCHHHHCCCEEHHEEEEEEEEEEEEE
ELDYDRYGDFAVGKVDPSISWANANKKSSVGGILRFERSF
EECCCCCCCEEEEEECCCEEECCCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
TSPSLIFERRSRMNITSLLLGSAAALIAVSCARAADAIVLAEPEPVEYVKICGVYGAGY
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCE
YYIPGTETCLRIGGYVRYDIGLGDVVSYDQARTTDVKTGEAQGIWQNHTRFTFKTWTGQE
EEECCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCC
TELGTLQTYIETRMNYGKHTAYSGSDSPRYHAFSQGITLTFAWVQLGGLRVGKDWSAFDM
CCCHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCEEEEEEEEECCEEECCCCCHHHH
FIGYAGDVLNQMLIPYGAFDTNVVQYYFDAGNGFSAVVSLEEGSGLVGTIDSYVPHLVGG
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEHHHHHHHHHCC
VKYTQHWGAITGVVAYDSNYESVAGKVRIDVDVTDQLSLFGMFGYGSSGKLNDDVTNAID
CEEEECCCCEEEEEEECCCHHHCCEEEEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHH
AHGRGFYKSWGGNWAFWAGATYKLNETTSLNLQLSGDQLRNYGVAANVAYTFLADFTITA
HCCCCCCCCCCCCEEEEECEEEEECCCEEEEEEECCHHHHCCCEEHHEEEEEEEEEEEEE
ELDYDRYGDFAVGKVDPSISWANANKKSSVGGILRFERSF
EECCCCCCCEEEEEECCCEEECCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]