| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is 13475320
Identifier: 13475320
GI number: 13475320
Start: 5172841
End: 5175279
Strand: Direct
Name: 13475320
Synonym: mlr6358
Alternate gene names: NA
Gene position: 5172841-5175279 (Clockwise)
Preceding gene: 13475313
Following gene: 13475322
Centisome position: 73.52
GC content: 60.48
Gene sequence:
>2439_bases ATGGCTGACACATCAGCCCCAATCCACAGACAGCGCGTTCTCGTCTATATCGGAGATGAAAAAATGACGGGCATTGGCCG ATCTGGAAAATCGCGCATTGGAGATGCTGGAGCCGGATCGAGCAGTTCGCGCTCGCAATCAGGTCTTGCCTCCGGGGAAG GCAGCCAAGGGTTCGGTTCCGTCCTGGAGCGGATGCGCTCTGAGGGAGGTAAAGGTTCACCCTCGGCTGGCGCTGCGCGA GGTGCCCATGATGACCTTGGCGGCAAATCTTCAGGCCCTTCCGTTCCCCCACATCGAATCCCGGCGGCTGCGCCACGTGC AGCCGCCGGGCCACGTGCGGCCGGTTCGCGGAGGCGCAGTGTTTCCTCAACGTCGGATGGTGAAGCCCTGGCGCCGGTCG CCAGCCAGCCGTCAACTTCGGGTGTGACAGTCCCCAGTTCCTCGTCAGGCGAAGTCATCAACGAGACAAAGCGACGAATG TGCTCGCTGATTGACGAAATCCAAGTTCTCGAAGAGAAGAGCCTGCATAGCGGAAAACCGATGGAGGGCTTCCGAGACGA GCTTGATCAGCTCGCTAATGCGGGCGCAGAACTTCTGGAATGCTACGCGAGCCTGCCCAAGGATGAGGCGCGCAGCACTC TGTCCGACGATGATGTGCGTCACTACCGCGCCGACGTGATTCATCGGGCGGACAGTGCCAACGAGCTGGCCCATACGATC TTCAAGAAGGAGGAACAGAACCGGAAGCGGATGGAGGACATTCTCCACAACTTGGTCAAATCCAATGCCACCCTCGACCA GCTGAGCCGATCGGCTCCCAGTATGGCGAAGTATCCCGTGGCCTGCGTGGAGCGTTGGGACAAGAAAGTACAGCGCCACG AATTGATGCGGGCCGTCTGCGTCGCGACAGCCGACTTACCAAGCTCAACAGCCGAGATGCGGCGGGAAGAAGAGGCCGCG CTGCGGCTGCACTCGGGCTGGGTTGTCAATTCAAAGATAATGCAGCTGCAATCGCGGATCAATCTCGCGCAGGTCAACAT GGCCCCGCAGGCGATCATGCTCGAAGCACCCATCAGGGAACTCCTCATCGGTGACAACGGGCAAACGCGTCTGCTGGGTA ACTTCATCGGCGAGGTTTTTCCGGCATTCGTCTCGACGGCCGAAGCTGTACTGAGGAAGGAAGGGCGCCCGCTCGACGCG GAACACTGCGCCGTTCTGGAAGGAGTTGTGGAGCGGCTTGCGGATTTTGCGTCGGCCTCGCACTCCGTGGTTGACAGGCT AAGGGATCACCAAGCAGGTGCTGGCCTCCCATTGGAACTGTTGACCCGGATCGTGGACGACGCCTGGATCGCTTCGGACG AGGTTACGGACCTCCTCGCACTGCAGCCGAAGCCGCCAGCCCCTGACCTGACGGCCGACGCTGCCGCTGCGATGCCGACT GGAACTGCCGGCAAGACTATGGTGGCCGAAAGCACTACAGCGCCCAGAAAAAAAGGAAAAGACAAGAGCAAGCAGGCCGC TGGCGCCGGGAGTTCGGCGGCCGGGCGGCCGGAGCCGCAAGTCGCTGCGGCCGTCAGCGACCCTGCGCCAGCAGCCAAGG TGCTCGTACGCACGGATTTAGGTACGAAGAAGCTCGTGAGTGCAGAGGAGGCGCAGAACAGTGCGTCGTCCGCGGCAGCA CGCTTGGCGATCTTGCAAAATCCAACGACGGGGGAAAACACGAAGTCACTAGTCGCACGGTCGACCGAACTTTTGAAGTT CGATTTGCCTGCTCAGCAAAGTTTGATCTCCCGAGCGCGCTCCGGGAAGCCCGAGGACGTCGAACACGCCGTCGGCCTCG TGGTCCAGCGCCTGCAAACGCAGGCTGTCGAGATGGAGCCCTGCCTCCCAGCGTTGGAGGCGTCTCGTCTCTCCAAGGAG GGAAAGATGGACGACGTGCACCGACTAACGGTTCAGTTCAGGGACATGTTGGCCAATGTGCGGGGATTGGCTAAAGCTTG GGACGAACAAAAGCCTGATATGATCATGGATTGCATGAAGAGGTACCCATTTCCCTCGCAAAACCACCTTGAGCAGTTGC GGTCGGCCCGGGAGTTGACGCCTGCAGATCCCCCGTGCGCGTTGAACCCAGAGCCGAGCAATCTGTTCGAGATTAGGCTG CAGCCCAAGGCGCTGAGCAACCGTACACTACCGAGTCCAATGTGGGTGCACATCCACACGACACGAAAGATATATGCGCA GCAGTTGGCAACGCTGGACAGCGCCGAGTTCGCCGCTTGCCACGTCAAGTCCAATGAACAGCGCGGCCATAATCGGCAGT GGCAGACCTCCCGGGCTAAGAAGGGTTACGACAACGCAATCCACCGCGGCAAGCTCACCCCGGCGTTCTGTAAGTCCTTG TTGAGCGACCGGGCCGATATGCGAAATGGGCCGGCGTAA
Upstream 100 bases:
>100_bases GCTGGCCATGACGACTGACGAAAACATGCCGCTGGTTCTCAGACGTCATGCCACCTGTCATCTGGGCGATTGCACTTACC CGCCAGAGCCCTGATGCACT
Downstream 100 bases:
>100_bases CATCGGCATTTTGTGGATTCCAACCAGCTTAGTAGACAGAGGCGCAATCTGGGAAACCCCTGGCAGAGCGGCAGTGGCCT GGATCGCAGGTGTGGCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Type III Effector Protein
Number of amino acids: Translated: 812; Mature: 811
Protein sequence:
>812_residues MADTSAPIHRQRVLVYIGDEKMTGIGRSGKSRIGDAGAGSSSSRSQSGLASGEGSQGFGSVLERMRSEGGKGSPSAGAAR GAHDDLGGKSSGPSVPPHRIPAAAPRAAAGPRAAGSRRRSVSSTSDGEALAPVASQPSTSGVTVPSSSSGEVINETKRRM CSLIDEIQVLEEKSLHSGKPMEGFRDELDQLANAGAELLECYASLPKDEARSTLSDDDVRHYRADVIHRADSANELAHTI FKKEEQNRKRMEDILHNLVKSNATLDQLSRSAPSMAKYPVACVERWDKKVQRHELMRAVCVATADLPSSTAEMRREEEAA LRLHSGWVVNSKIMQLQSRINLAQVNMAPQAIMLEAPIRELLIGDNGQTRLLGNFIGEVFPAFVSTAEAVLRKEGRPLDA EHCAVLEGVVERLADFASASHSVVDRLRDHQAGAGLPLELLTRIVDDAWIASDEVTDLLALQPKPPAPDLTADAAAAMPT GTAGKTMVAESTTAPRKKGKDKSKQAAGAGSSAAGRPEPQVAAAVSDPAPAAKVLVRTDLGTKKLVSAEEAQNSASSAAA RLAILQNPTTGENTKSLVARSTELLKFDLPAQQSLISRARSGKPEDVEHAVGLVVQRLQTQAVEMEPCLPALEASRLSKE GKMDDVHRLTVQFRDMLANVRGLAKAWDEQKPDMIMDCMKRYPFPSQNHLEQLRSARELTPADPPCALNPEPSNLFEIRL QPKALSNRTLPSPMWVHIHTTRKIYAQQLATLDSAEFAACHVKSNEQRGHNRQWQTSRAKKGYDNAIHRGKLTPAFCKSL LSDRADMRNGPA
Sequences:
>Translated_812_residues MADTSAPIHRQRVLVYIGDEKMTGIGRSGKSRIGDAGAGSSSSRSQSGLASGEGSQGFGSVLERMRSEGGKGSPSAGAAR GAHDDLGGKSSGPSVPPHRIPAAAPRAAAGPRAAGSRRRSVSSTSDGEALAPVASQPSTSGVTVPSSSSGEVINETKRRM CSLIDEIQVLEEKSLHSGKPMEGFRDELDQLANAGAELLECYASLPKDEARSTLSDDDVRHYRADVIHRADSANELAHTI FKKEEQNRKRMEDILHNLVKSNATLDQLSRSAPSMAKYPVACVERWDKKVQRHELMRAVCVATADLPSSTAEMRREEEAA LRLHSGWVVNSKIMQLQSRINLAQVNMAPQAIMLEAPIRELLIGDNGQTRLLGNFIGEVFPAFVSTAEAVLRKEGRPLDA EHCAVLEGVVERLADFASASHSVVDRLRDHQAGAGLPLELLTRIVDDAWIASDEVTDLLALQPKPPAPDLTADAAAAMPT GTAGKTMVAESTTAPRKKGKDKSKQAAGAGSSAAGRPEPQVAAAVSDPAPAAKVLVRTDLGTKKLVSAEEAQNSASSAAA RLAILQNPTTGENTKSLVARSTELLKFDLPAQQSLISRARSGKPEDVEHAVGLVVQRLQTQAVEMEPCLPALEASRLSKE GKMDDVHRLTVQFRDMLANVRGLAKAWDEQKPDMIMDCMKRYPFPSQNHLEQLRSARELTPADPPCALNPEPSNLFEIRL QPKALSNRTLPSPMWVHIHTTRKIYAQQLATLDSAEFAACHVKSNEQRGHNRQWQTSRAKKGYDNAIHRGKLTPAFCKSL LSDRADMRNGPA >Mature_811_residues ADTSAPIHRQRVLVYIGDEKMTGIGRSGKSRIGDAGAGSSSSRSQSGLASGEGSQGFGSVLERMRSEGGKGSPSAGAARG AHDDLGGKSSGPSVPPHRIPAAAPRAAAGPRAAGSRRRSVSSTSDGEALAPVASQPSTSGVTVPSSSSGEVINETKRRMC SLIDEIQVLEEKSLHSGKPMEGFRDELDQLANAGAELLECYASLPKDEARSTLSDDDVRHYRADVIHRADSANELAHTIF KKEEQNRKRMEDILHNLVKSNATLDQLSRSAPSMAKYPVACVERWDKKVQRHELMRAVCVATADLPSSTAEMRREEEAAL RLHSGWVVNSKIMQLQSRINLAQVNMAPQAIMLEAPIRELLIGDNGQTRLLGNFIGEVFPAFVSTAEAVLRKEGRPLDAE HCAVLEGVVERLADFASASHSVVDRLRDHQAGAGLPLELLTRIVDDAWIASDEVTDLLALQPKPPAPDLTADAAAAMPTG TAGKTMVAESTTAPRKKGKDKSKQAAGAGSSAAGRPEPQVAAAVSDPAPAAKVLVRTDLGTKKLVSAEEAQNSASSAAAR LAILQNPTTGENTKSLVARSTELLKFDLPAQQSLISRARSGKPEDVEHAVGLVVQRLQTQAVEMEPCLPALEASRLSKEG KMDDVHRLTVQFRDMLANVRGLAKAWDEQKPDMIMDCMKRYPFPSQNHLEQLRSARELTPADPPCALNPEPSNLFEIRLQ PKALSNRTLPSPMWVHIHTTRKIYAQQLATLDSAEFAACHVKSNEQRGHNRQWQTSRAKKGYDNAIHRGKLTPAFCKSLL SDRADMRNGPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87395; Mature: 87263
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTSAPIHRQRVLVYIGDEKMTGIGRSGKSRIGDAGAGSSSSRSQSGLASGEGSQGFGS CCCCCCCCCCCEEEEEECCCHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH VLERMRSEGGKGSPSAGAARGAHDDLGGKSSGPSVPPHRIPAAAPRAAAGPRAAGSRRRS HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC VSSTSDGEALAPVASQPSTSGVTVPSSSSGEVINETKRRMCSLIDEIQVLEEKSLHSGKP CCCCCCCCEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC MEGFRDELDQLANAGAELLECYASLPKDEARSTLSDDDVRHYRADVIHRADSANELAHTI CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH FKKEEQNRKRMEDILHNLVKSNATLDQLSRSAPSMAKYPVACVERWDKKVQRHELMRAVC HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VATADLPSSTAEMRREEEAALRLHSGWVVNSKIMQLQSRINLAQVNMAPQAIMLEAPIRE HHHCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHH LLIGDNGQTRLLGNFIGEVFPAFVSTAEAVLRKEGRPLDAEHCAVLEGVVERLADFASAS HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH HSVVDRLRDHQAGAGLPLELLTRIVDDAWIASDEVTDLLALQPKPPAPDLTADAAAAMPT HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHEECCCCCCCCCCCHHHHCCCC GTAGKTMVAESTTAPRKKGKDKSKQAAGAGSSAAGRPEPQVAAAVSDPAPAAKVLVRTDL CCCCCEEEECCCCCCHHCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHEEEECCC GTKKLVSAEEAQNSASSAAARLAILQNPTTGENTKSLVARSTELLKFDLPAQQSLISRAR CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHH SGKPEDVEHAVGLVVQRLQTQAVEMEPCLPALEASRLSKEGKMDDVHRLTVQFRDMLANV CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH RGLAKAWDEQKPDMIMDCMKRYPFPSQNHLEQLRSARELTPADPPCALNPEPSNLFEIRL HHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE QPKALSNRTLPSPMWVHIHTTRKIYAQQLATLDSAEFAACHVKSNEQRGHNRQWQTSRAK CCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCHHHHHHH KGYDNAIHRGKLTPAFCKSLLSDRADMRNGPA CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ADTSAPIHRQRVLVYIGDEKMTGIGRSGKSRIGDAGAGSSSSRSQSGLASGEGSQGFGS CCCCCCCCCCEEEEEECCCHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH VLERMRSEGGKGSPSAGAARGAHDDLGGKSSGPSVPPHRIPAAAPRAAAGPRAAGSRRRS HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC VSSTSDGEALAPVASQPSTSGVTVPSSSSGEVINETKRRMCSLIDEIQVLEEKSLHSGKP CCCCCCCCEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC MEGFRDELDQLANAGAELLECYASLPKDEARSTLSDDDVRHYRADVIHRADSANELAHTI CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH FKKEEQNRKRMEDILHNLVKSNATLDQLSRSAPSMAKYPVACVERWDKKVQRHELMRAVC HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VATADLPSSTAEMRREEEAALRLHSGWVVNSKIMQLQSRINLAQVNMAPQAIMLEAPIRE HHHCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHH LLIGDNGQTRLLGNFIGEVFPAFVSTAEAVLRKEGRPLDAEHCAVLEGVVERLADFASAS HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH HSVVDRLRDHQAGAGLPLELLTRIVDDAWIASDEVTDLLALQPKPPAPDLTADAAAAMPT HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHEECCCCCCCCCCCHHHHCCCC GTAGKTMVAESTTAPRKKGKDKSKQAAGAGSSAAGRPEPQVAAAVSDPAPAAKVLVRTDL CCCCCEEEECCCCCCHHCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHEEEECCC GTKKLVSAEEAQNSASSAAARLAILQNPTTGENTKSLVARSTELLKFDLPAQQSLISRAR CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHH SGKPEDVEHAVGLVVQRLQTQAVEMEPCLPALEASRLSKEGKMDDVHRLTVQFRDMLANV CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH RGLAKAWDEQKPDMIMDCMKRYPFPSQNHLEQLRSARELTPADPPCALNPEPSNLFEIRL HHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE QPKALSNRTLPSPMWVHIHTTRKIYAQQLATLDSAEFAACHVKSNEQRGHNRQWQTSRAK CCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCHHHHHHH KGYDNAIHRGKLTPAFCKSLLSDRADMRNGPA CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA