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The map label for this gene is ygiX [C]

Identifier: 13475293

GI number: 13475293

Start: 5148329

End: 5149000

Strand: Direct

Name: ygiX [C]

Synonym: mlr6334

Alternate gene names: 13475293

Gene position: 5148329-5149000 (Clockwise)

Preceding gene: 13475291

Following gene: 13475294

Centisome position: 73.17

GC content: 51.93

Gene sequence:

>672_bases
ATGCGAACGCTATTCGTTGACCACCATGCGGATCTTACGCGAGCGGTGGGAGTTGCACTCGGCGATAGCGGTTTCGCCGT
TGATGTTGTTCCCACACTGGAACAAGCATCGAGTGCATTTTCTTGCGCCAGCTACGAAATTCTCCTGCTGGAGCTGGTTC
TGCCGGATGGCGATGGCTTGGATTGGCTGAAGCAGCTAAGGGGTGAGGGACATTCAGTTCCTGCTCTCATTTTGAGTGAC
GTCGACGATCTTGAGAAGCGAATTGCGATTTTCAACGGTGGTGCGGACGATTTTCTGCTCAAGCCAGTGTATACTAATGA
GCTCATTGCCAGAATGAGAGCCGTTCTGCGGCGGTCGACTCAGATGACTGCCCCGATCATTGTATTTGGCAATCTCCACT
TCGATCCGATCGGCCGACAGGTTTCCGTTGCTGGTTATCCACTGACGGTCGCACGCCGTGAATTATGTATTTTAGAGCAT
CTGCTCAACCGTGCAGGCCGCATCGTGCCGCGTTCGCAGTTGGAAGATCACCTCTATTCGTTCAACGATGAAGTATCGGC
CAACGCGCTTGAAGTCGGAATCTATCGCTTACGTCGATATCTGAGCAGTTCAAACGCAACGCCACGGATAAAAACGGTGC
GTGGCATTGGTTACATTCTTGAATGTGACTAG

Upstream 100 bases:

>100_bases
GTCCCAAAGAGGATTACGAACACTGCGACGCGTTGCGCGACTTCTGCTTTCGCCGTCTCAACAGTCTCGGTGACCTGTCC
TACCATTAATAGGAGATGAA

Downstream 100 bases:

>100_bases
CGCGACATTCGTATAGTTGGCCGAATTTGAAAGAAAAGACCGCCTTGAAAATCATTACAACTCATTCTGACACCGATCGG
CGGCCCCCGCACATCGTTTG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGLDWLKQLRGEGHSVPALILSD
VDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRSTQMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEH
LLNRAGRIVPRSQLEDHLYSFNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILECD

Sequences:

>Translated_223_residues
MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGLDWLKQLRGEGHSVPALILSD
VDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRSTQMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEH
LLNRAGRIVPRSQLEDHLYSFNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILECD
>Mature_223_residues
MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGLDWLKQLRGEGHSVPALILSD
VDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRSTQMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEH
LLNRAGRIVPRSQLEDHLYSFNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILECD

Specific function: Probable Member Of A Two-Component Regulatory System Ygix/Ygiy. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=37.2727272727273, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=36.8181818181818, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=30.3964757709251, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=28.3783783783784, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=28.8990825688073, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=29.5454545454545, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786911, Length=218, Percent_Identity=31.1926605504587, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=29.5652173913043, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1790860, Length=209, Percent_Identity=30.622009569378, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=30.2631578947368, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=28.2608695652174, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788394, Length=231, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24690; Mature: 24690

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGL
CCEEEECCCCHHHHHHHHEECCCCCEEEEECCHHHHHCHHHHCCCEEEEEEEECCCCCCH
DWLKQLRGEGHSVPALILSDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRST
HHHHHHHCCCCCCCCHHHCCHHHHHHHEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHC
QMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEHLLNRAGRIVPRSQLEDHLYS
CCCCCEEEEECCEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
FNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILECD
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEC
>Mature Secondary Structure
MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGL
CCEEEECCCCHHHHHHHHEECCCCCEEEEECCHHHHHCHHHHCCCEEEEEEEECCCCCCH
DWLKQLRGEGHSVPALILSDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRST
HHHHHHHCCCCCCCCHHHCCHHHHHHHEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHC
QMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEHLLNRAGRIVPRSQLEDHLYS
CCCCCEEEEECCEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
FNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILECD
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]