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The map label for this gene is yliB [C]

Identifier: 13475260

GI number: 13475260

Start: 5105841

End: 5107436

Strand: Direct

Name: yliB [C]

Synonym: mlr6288

Alternate gene names: 13475260

Gene position: 5105841-5107436 (Clockwise)

Preceding gene: 13475259

Following gene: 13475261

Centisome position: 72.57

GC content: 55.51

Gene sequence:

>1596_bases
ATGAAGATGAGCGCGAATAGCCGCAAAAGCGTGGCGAGGCGGATAATGCTTTCGTCGTTGTTTGCCGGGGGTTTTTTCAC
CAGCACGGCAATGGCCGATACGCTTCGCGTGATAGCTGACACAGATCTCAAAACCGTAGATCCTATAGTAACGACATCTG
GCACGACCTTGGTTCACGCCTATCTGATCTACGACAAATTGTTCGAGTTCGACAAAGACGGCATCGCCCGTCCCGAGTTG
GCTGACAAAGTCGATATTAGTGCCGACAAGAAAAGCTATACGATCACGCTTCGGAAAGGCCTGAAATTTTCCGATGGAGG
CGCGATCACGACCGACGACGTTCTGCAATCCCTCAAGCGCTGGGCTTCCCGGGACCAAACCGGGCAGTTGTTGGCTGCCA
GGCTCAAGGAAATGACGAAAGTCGATGATCTGACATTTCGCGTTGAGCTGAGCCAGCCGTTCGACGTGCCCGCTGCGCTT
GCCGGTATCACGGGCAACCCTGCTTTTATCATGCCCAAGCGGGTTGCGTCGTTGCCGCCAACGGACCAGTTAACGGACAC
GACAGGCTCCGGACCCTATCAATTTGACTATACGTCTTGGAAACCAGGGCAGACACGCATCTATATCAAAAATCCCAATT
ACGTTCCGCGGAATGACCCGCCGAGCTTCTTCGCCGGCAAGAAAGAGGCGACTTTCGACAAGATCGAAATGTCTTACGTG
CCGGATGCAAACACCGCAATGGCGCAGATGCTGACGGGGCAACAGGACATCTGGCCAGGTCCTCCAATGGATAATGCTCT
GGCCTTGAAAGCTAATCCGGACCTCGTGGTAGCGAAGGGATTCTTCACGCAAGGCCTTTACGTCATAAACCACGTTGTGC
GTCCGTTCGATAACGTCAAGGCGCGTGAAGCCCTCACCTATCTGATTGACCAGGCTGAGATCAATCGCGCCGCAGTGGGA
GACCAGGAATTTTGGCACACGTGCTATGCCTATCTGACCTGTGAGGGGACGTACGGCGACGAGTCCGCCTATACCGGCCA
TCGGGGGGCAGCCGATTTTGACAAGGCGAAAAAGCTCCTTGAAGAGGCCGGTTACGACGGAAAGCCGATAGTGGTACTCG
ACCCCACAGATTGGTCTGAAGCCCATGCAAGGGCTCTGTACATGGCGCAGCAACTGAGAAAGGCCGGTGCTCAGGTTGAC
CTGCAAGCGATGGATTGGTCGACTCTGACGTCGCGCCGTACGTCTAAGGCGCCGGCTTCCGAAGGCGGCTGGAACCTGTT
CCCTAATATCATGGAGGGCCAGCCAGCCTCGTCTCCGCTTACACATCTCATGCTTGCCGCTAACTGTGACAAGGCTTGGT
TCGGATGGCCCTGCGACAAGGGTATCGAGGACTTGCGGGCGGCATTCATCAGCGCCGGGGACCTTAGTGAGAAGAAAAAG
ATCGCCAGTGAAATCCAGGCCCGCGCATCTACCTATCTGCCCTTCATCATGACGGGAGAGAACACCGCGGCCGTTGTCTA
CCGAGCCGACATCGAAGGGTTTAACCCCGAAACGCCTGAAGTGTACTTCTGGAATATCCGGCGCAAGAGCAAGTAG

Upstream 100 bases:

>100_bases
CACACCGTCATGATCTGGGACCCAGAATGGGACAAGAAGGAAGCGCCGGCCGTCGCTGCCTGACGTCGTTGTGAACGGCC
AGAAAAAGGGGAACTAAAAA

Downstream 100 bases:

>100_bases
CGCGCCCAATCCGCGGCCGAGAGGTTATTGTGATCAGGTATCTCATCACCAGAATGCTTTCCATCATACCGGTGATGGGG
GTCGTAACCGCCGTTGTTTT

Product: ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MKMSANSRKSVARRIMLSSLFAGGFFTSTAMADTLRVIADTDLKTVDPIVTTSGTTLVHAYLIYDKLFEFDKDGIARPEL
ADKVDISADKKSYTITLRKGLKFSDGGAITTDDVLQSLKRWASRDQTGQLLAARLKEMTKVDDLTFRVELSQPFDVPAAL
AGITGNPAFIMPKRVASLPPTDQLTDTTGSGPYQFDYTSWKPGQTRIYIKNPNYVPRNDPPSFFAGKKEATFDKIEMSYV
PDANTAMAQMLTGQQDIWPGPPMDNALALKANPDLVVAKGFFTQGLYVINHVVRPFDNVKAREALTYLIDQAEINRAAVG
DQEFWHTCYAYLTCEGTYGDESAYTGHRGAADFDKAKKLLEEAGYDGKPIVVLDPTDWSEAHARALYMAQQLRKAGAQVD
LQAMDWSTLTSRRTSKAPASEGGWNLFPNIMEGQPASSPLTHLMLAANCDKAWFGWPCDKGIEDLRAAFISAGDLSEKKK
IASEIQARASTYLPFIMTGENTAAVVYRADIEGFNPETPEVYFWNIRRKSK

Sequences:

>Translated_531_residues
MKMSANSRKSVARRIMLSSLFAGGFFTSTAMADTLRVIADTDLKTVDPIVTTSGTTLVHAYLIYDKLFEFDKDGIARPEL
ADKVDISADKKSYTITLRKGLKFSDGGAITTDDVLQSLKRWASRDQTGQLLAARLKEMTKVDDLTFRVELSQPFDVPAAL
AGITGNPAFIMPKRVASLPPTDQLTDTTGSGPYQFDYTSWKPGQTRIYIKNPNYVPRNDPPSFFAGKKEATFDKIEMSYV
PDANTAMAQMLTGQQDIWPGPPMDNALALKANPDLVVAKGFFTQGLYVINHVVRPFDNVKAREALTYLIDQAEINRAAVG
DQEFWHTCYAYLTCEGTYGDESAYTGHRGAADFDKAKKLLEEAGYDGKPIVVLDPTDWSEAHARALYMAQQLRKAGAQVD
LQAMDWSTLTSRRTSKAPASEGGWNLFPNIMEGQPASSPLTHLMLAANCDKAWFGWPCDKGIEDLRAAFISAGDLSEKKK
IASEIQARASTYLPFIMTGENTAAVVYRADIEGFNPETPEVYFWNIRRKSK
>Mature_531_residues
MKMSANSRKSVARRIMLSSLFAGGFFTSTAMADTLRVIADTDLKTVDPIVTTSGTTLVHAYLIYDKLFEFDKDGIARPEL
ADKVDISADKKSYTITLRKGLKFSDGGAITTDDVLQSLKRWASRDQTGQLLAARLKEMTKVDDLTFRVELSQPFDVPAAL
AGITGNPAFIMPKRVASLPPTDQLTDTTGSGPYQFDYTSWKPGQTRIYIKNPNYVPRNDPPSFFAGKKEATFDKIEMSYV
PDANTAMAQMLTGQQDIWPGPPMDNALALKANPDLVVAKGFFTQGLYVINHVVRPFDNVKAREALTYLIDQAEINRAAVG
DQEFWHTCYAYLTCEGTYGDESAYTGHRGAADFDKAKKLLEEAGYDGKPIVVLDPTDWSEAHARALYMAQQLRKAGAQVD
LQAMDWSTLTSRRTSKAPASEGGWNLFPNIMEGQPASSPLTHLMLAANCDKAWFGWPCDKGIEDLRAAFISAGDLSEKKK
IASEIQARASTYLPFIMTGENTAAVVYRADIEGFNPETPEVYFWNIRRKSK

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=520, Percent_Identity=26.3461538461538, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789966, Length=532, Percent_Identity=24.4360902255639, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787762, Length=331, Percent_Identity=25.9818731117825, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1789887, Length=438, Percent_Identity=23.972602739726, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58747; Mature: 58747

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMSANSRKSVARRIMLSSLFAGGFFTSTAMADTLRVIADTDLKTVDPIVTTSGTTLVHA
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHH
YLIYDKLFEFDKDGIARPELADKVDISADKKSYTITLRKGLKFSDGGAITTDDVLQSLKR
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHHH
WASRDQTGQLLAARLKEMTKVDDLTFRVELSQPFDVPAALAGITGNPAFIMPKRVASLPP
HHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCCCCEEECHHHCCCCC
TDQLTDTTGSGPYQFDYTSWKPGQTRIYIKNPNYVPRNDPPSFFAGKKEATFDKIEMSYV
CCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEEEC
PDANTAMAQMLTGQQDIWPGPPMDNALALKANPDLVVAKGFFTQGLYVINHVVRPFDNVK
CCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCHH
AREALTYLIDQAEINRAAVGDQEFWHTCYAYLTCEGTYGDESAYTGHRGAADFDKAKKLL
HHHHHHHHHHHHHCCHHHCCCHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
EEAGYDGKPIVVLDPTDWSEAHARALYMAQQLRKAGAQVDLQAMDWSTLTSRRTSKAPAS
HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCC
EGGWNLFPNIMEGQPASSPLTHLMLAANCDKAWFGWPCDKGIEDLRAAFISAGDLSEKKK
CCCCCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
IASEIQARASTYLPFIMTGENTAAVVYRADIEGFNPETPEVYFWNIRRKSK
HHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKMSANSRKSVARRIMLSSLFAGGFFTSTAMADTLRVIADTDLKTVDPIVTTSGTTLVHA
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHH
YLIYDKLFEFDKDGIARPELADKVDISADKKSYTITLRKGLKFSDGGAITTDDVLQSLKR
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHHH
WASRDQTGQLLAARLKEMTKVDDLTFRVELSQPFDVPAALAGITGNPAFIMPKRVASLPP
HHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCCCCEEECHHHCCCCC
TDQLTDTTGSGPYQFDYTSWKPGQTRIYIKNPNYVPRNDPPSFFAGKKEATFDKIEMSYV
CCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEEEC
PDANTAMAQMLTGQQDIWPGPPMDNALALKANPDLVVAKGFFTQGLYVINHVVRPFDNVK
CCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCHH
AREALTYLIDQAEINRAAVGDQEFWHTCYAYLTCEGTYGDESAYTGHRGAADFDKAKKLL
HHHHHHHHHHHHHCCHHHCCCHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
EEAGYDGKPIVVLDPTDWSEAHARALYMAQQLRKAGAQVDLQAMDWSTLTSRRTSKAPAS
HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCC
EGGWNLFPNIMEGQPASSPLTHLMLAANCDKAWFGWPCDKGIEDLRAAFISAGDLSEKKK
CCCCCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
IASEIQARASTYLPFIMTGENTAAVVYRADIEGFNPETPEVYFWNIRRKSK
HHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]