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The map label for this gene is ypdF [C]

Identifier: 13475226

GI number: 13475226

Start: 5072121

End: 5073254

Strand: Reverse

Name: ypdF [C]

Synonym: mll6252

Alternate gene names: 13475226

Gene position: 5073254-5072121 (Counterclockwise)

Preceding gene: 13475227

Following gene: 13475225

Centisome position: 72.1

GC content: 53.35

Gene sequence:

>1134_bases
ATGGACTTTGTCGCAGAGGAGTACAGCCGGCGCTTGGCTGAGATTCAGAGGCAGCTCGAGTTAAACGATCTTCCGGCGAT
ACTCTTGCACCAACCGGAGAATATTCGGTACGTGAGTGGTTTCCATACCATGGGTTACTTTACGTACCATGCGTTACTCG
TGCCAGCACGCGGTAACCCCATTTTGGTCATTCGCGATCAGGAAGAAAATGCTGCGAAGAAAACGGCTTGGGTCAAAGAA
TGGACAACATATTCTGACGCAAAGGAACCTCTCCCACCGCAGATCGCAGCGGCGGTCCGCGCAATTGATCAAGCAGGTCT
CGCCGGTGGGAAAATCGGGGTCGATTACCACTCCTGGTTTTTAACGCCTGAGCGACTTGAGGAGTTAAGGAGACAGGCAC
CGCATACAACGTTCATTAAAGAGCCGAAGATAGTTGATCATCTCCGGTTAGTGAAGTCGGCGCCGGAGATCGAGGTAGTT
CGTCGGGCAGCTCAGGCGGCCATGTCGGCAATGCAGAGTGCTGTTGATGCCGTGGAAACCGGAGTTAGCGAGCGAAAGTT
GGCTGCGGCTGTCTATTCGGGACTTGTCTTTGGTGGCGGTGAGGTGGGCGTTGACTGCGTCATAACTTCTGGAGAGCGGA
CTTTTGAATTGCATGGCTCTCATACGGACCGGCGCGTTCAGGCAGGTGATCAGGTCTATTTCGAGCTAACTGGCAGCGTA
GACTGGTATCTGGCGCGATGCATGCGCGCCGTCATTAACGGTACGCCGACTGATGCTCAAAGGCGGGTCGCGGAATCGAT
TATATTAGTACAGGATGCGGGTATAGCCAGAATGAAAGTTGGCGCAGTTGCTGGCGATGTAGATAGATTTATGCGACACG
GCTTGCTCGCGACCGGTGCGAGAGAGAGTTATACGAACCGAACCGCCTATTCTCTAGGCCTTAATAACAAGCCGTCAGCG
GGTGAATTCGAACGAGAACTAGTTCCCGGGGCTGAATGGACCTTTGAGGCAGGAATGGTTTTCCATGTCCTGATGATGGC
ACAGGGCATTGGCTTCAGCGAAACCGTATTGATCACGGATAACGGTCCGGAGCGACTCACAACAATGGAACGTAAGCTCT
TCGCGCGCAAATGA

Upstream 100 bases:

>100_bases
AGTGAAATTGGTTGTGTATCGAACGTTATCTGCGATCAGAGCGTGTTGCACTTCGTTCGTACCAACTGGACAGCATCATA
ACCTTTAGGAGAGCGGTAGC

Downstream 100 bases:

>100_bases
ATGGGAGTGAACACCATGAAACCAGTTATCGGAATTGTCAGTGACCTCGACGTGGAAAAAGACGGCTACGTCTGCCTTGC
GAATTACGTTCGGGCGATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MDFVAEEYSRRLAEIQRQLELNDLPAILLHQPENIRYVSGFHTMGYFTYHALLVPARGNPILVIRDQEENAAKKTAWVKE
WTTYSDAKEPLPPQIAAAVRAIDQAGLAGGKIGVDYHSWFLTPERLEELRRQAPHTTFIKEPKIVDHLRLVKSAPEIEVV
RRAAQAAMSAMQSAVDAVETGVSERKLAAAVYSGLVFGGGEVGVDCVITSGERTFELHGSHTDRRVQAGDQVYFELTGSV
DWYLARCMRAVINGTPTDAQRRVAESIILVQDAGIARMKVGAVAGDVDRFMRHGLLATGARESYTNRTAYSLGLNNKPSA
GEFERELVPGAEWTFEAGMVFHVLMMAQGIGFSETVLITDNGPERLTTMERKLFARK

Sequences:

>Translated_377_residues
MDFVAEEYSRRLAEIQRQLELNDLPAILLHQPENIRYVSGFHTMGYFTYHALLVPARGNPILVIRDQEENAAKKTAWVKE
WTTYSDAKEPLPPQIAAAVRAIDQAGLAGGKIGVDYHSWFLTPERLEELRRQAPHTTFIKEPKIVDHLRLVKSAPEIEVV
RRAAQAAMSAMQSAVDAVETGVSERKLAAAVYSGLVFGGGEVGVDCVITSGERTFELHGSHTDRRVQAGDQVYFELTGSV
DWYLARCMRAVINGTPTDAQRRVAESIILVQDAGIARMKVGAVAGDVDRFMRHGLLATGARESYTNRTAYSLGLNNKPSA
GEFERELVPGAEWTFEAGMVFHVLMMAQGIGFSETVLITDNGPERLTTMERKLFARK
>Mature_377_residues
MDFVAEEYSRRLAEIQRQLELNDLPAILLHQPENIRYVSGFHTMGYFTYHALLVPARGNPILVIRDQEENAAKKTAWVKE
WTTYSDAKEPLPPQIAAAVRAIDQAGLAGGKIGVDYHSWFLTPERLEELRRQAPHTTFIKEPKIVDHLRLVKSAPEIEVV
RRAAQAAMSAMQSAVDAVETGVSERKLAAAVYSGLVFGGGEVGVDCVITSGERTFELHGSHTDRRVQAGDQVYFELTGSV
DWYLARCMRAVINGTPTDAQRRVAESIILVQDAGIARMKVGAVAGDVDRFMRHGLLATGARESYTNRTAYSLGLNNKPSA
GEFERELVPGAEWTFEAGMVFHVLMMAQGIGFSETVLITDNGPERLTTMERKLFARK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 41776; Mature: 41776

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFVAEEYSRRLAEIQRQLELNDLPAILLHQPENIRYVSGFHTMGYFTYHALLVPARGNP
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECHHHHHHEEEEEEEEECCCCE
ILVIRDQEENAAKKTAWVKEWTTYSDAKEPLPPQIAAAVRAIDQAGLAGGKIGVDYHSWF
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHEE
LTPERLEELRRQAPHTTFIKEPKIVDHLRLVKSAPEIEVVRRAAQAAMSAMQSAVDAVET
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GVSERKLAAAVYSGLVFGGGEVGVDCVITSGERTFELHGSHTDRRVQAGDQVYFELTGSV
CCHHHHHHHHHHHHHEECCCCCCEEEEEECCCEEEEECCCCCCCHHCCCCEEEEEEECCH
DWYLARCMRAVINGTPTDAQRRVAESIILVQDAGIARMKVGAVAGDVDRFMRHGLLATGA
HHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHCCCHHCCC
RESYTNRTAYSLGLNNKPSAGEFERELVPGAEWTFEAGMVFHVLMMAQGIGFSETVLITD
CHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEC
NGPERLTTMERKLFARK
CCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFVAEEYSRRLAEIQRQLELNDLPAILLHQPENIRYVSGFHTMGYFTYHALLVPARGNP
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECHHHHHHEEEEEEEEECCCCE
ILVIRDQEENAAKKTAWVKEWTTYSDAKEPLPPQIAAAVRAIDQAGLAGGKIGVDYHSWF
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHEE
LTPERLEELRRQAPHTTFIKEPKIVDHLRLVKSAPEIEVVRRAAQAAMSAMQSAVDAVET
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GVSERKLAAAVYSGLVFGGGEVGVDCVITSGERTFELHGSHTDRRVQAGDQVYFELTGSV
CCHHHHHHHHHHHHHEECCCCCCEEEEEECCCEEEEECCCCCCCHHCCCCEEEEEEECCH
DWYLARCMRAVINGTPTDAQRRVAESIILVQDAGIARMKVGAVAGDVDRFMRHGLLATGA
HHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHCCCHHCCC
RESYTNRTAYSLGLNNKPSAGEFERELVPGAEWTFEAGMVFHVLMMAQGIGFSETVLITD
CHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEC
NGPERLTTMERKLFARK
CCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]