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The map label for this gene is soxD [H]

Identifier: 13475213

GI number: 13475213

Start: 5057562

End: 5057837

Strand: Reverse

Name: soxD [H]

Synonym: msl6239

Alternate gene names: 13475213

Gene position: 5057837-5057562 (Counterclockwise)

Preceding gene: 13475214

Following gene: 13475212

Centisome position: 71.88

GC content: 62.68

Gene sequence:

>276_bases
ATGGCAAGCCTTATCCCATGCCCTCATTGCGGCTCTCGACCCAAAGAGGAATTCACCGTGAAGGGCGCGGCAGTTGCCCG
ACCGGCACCCGATGCCGACACGGATTTGTGGATCGACTATGTCTATCTGCGCGACAATCCGCGCGGCGCCTATGAGGAAT
ATTGGCATCATACGTCGGGCTGCCGGCGCTGGCTGGTGGTCAGCCGCAATACGGCGACGCATGAAATCTCGGGCTCCGGC
GACGCGGTGCTCGACCTGACGGCGGAGGCGCTCTGA

Upstream 100 bases:

>100_bases
TCGCGCCTTCCGGCTCGACCGCTTCGCGCGTGGCCATATCCTCGACGAAAAGGGCCAGGGCGCCCAGCCCAACCTTCACT
GATTTCCAGGATACCTGAAC

Downstream 100 bases:

>100_bases
TGACCTCTTATCGACTGCCCAGCGGTGGCCTGATCGATCGTCACTCACGCCTCGGCTTCAGCTTCGATGGCCAGTCACTC
ACGGGTCATGCCGGCGATAC

Product: sarcosine oxidase delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MASLIPCPHCGSRPKEEFTVKGAAVARPAPDADTDLWIDYVYLRDNPRGAYEEYWHHTSGCRRWLVVSRNTATHEISGSG
DAVLDLTAEAL

Sequences:

>Translated_91_residues
MASLIPCPHCGSRPKEEFTVKGAAVARPAPDADTDLWIDYVYLRDNPRGAYEEYWHHTSGCRRWLVVSRNTATHEISGSG
DAVLDLTAEAL
>Mature_90_residues
ASLIPCPHCGSRPKEEFTVKGAAVARPAPDADTDLWIDYVYLRDNPRGAYEEYWHHTSGCRRWLVVSRNTATHEISGSGD
AVLDLTAEAL

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 10086; Mature: 9955

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLIPCPHCGSRPKEEFTVKGAAVARPAPDADTDLWIDYVYLRDNPRGAYEEYWHHTSG
CCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCC
CRRWLVVSRNTATHEISGSGDAVLDLTAEAL
CEEEEEEECCCCCEEECCCCCEEEEEEECCC
>Mature Secondary Structure 
ASLIPCPHCGSRPKEEFTVKGAAVARPAPDADTDLWIDYVYLRDNPRGAYEEYWHHTSG
CCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCC
CRRWLVVSRNTATHEISGSGDAVLDLTAEAL
CEEEEEEECCCCCEEECCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]