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The map label for this gene is glxA [H]

Identifier: 13475210

GI number: 13475210

Start: 5052895

End: 5053965

Strand: Reverse

Name: glxA [H]

Synonym: mll6236

Alternate gene names: 13475210

Gene position: 5053965-5052895 (Counterclockwise)

Preceding gene: 13475211

Following gene: 13475209

Centisome position: 71.83

GC content: 55.93

Gene sequence:

>1071_bases
ATGAAGGTGGCAAAACGACTGTTCAGTCTCTATCTGTGGCCTGGATTTTCACTACAGGCTTTTTCGTCTGCAGTAGAGGC
CCTACGGCTCGCCAACGAAGTGCTTGAAACAGAGAGCTACGCTTGGCGAGTTGTATCTGACGACGGACACCCTGTAAGAT
CGAACAGCGGACTTACGATCTCCGTCGATACGTCGCTCAAGGAGGAACGCGGCCTTCGTGGCAGAATGGGCTCGTTCCCT
TCGGTCGCGGTAATTTGCGGGGGTAGCCACCCCCTTGCCGTTAATCGGGCCCTGAATAGCTGGTTGCGGGACTGCCGGGC
TAGAAAACTGTGTCTGGTTGGAATCGCAAGCGGGGTCTTCAGCATCGCGCAGACTGGTCTGGCAGATGGACGAAGATGCG
CAGTGCACTGGGAACAGTTCCCTTCATTCGTCGAGCAATTTCCAGGTGTCACTGCGGTTCAATCTGCTTTTGAGATCGAT
GGTGACACGTACTCCTGCTCAGGTGGGGATGCTGCTTTCGATATGTTCGTGCAGTTTGTCATAGAGGACTATGATACCTC
CATTGCCAGCCGGGTGTGCGAGAAGGCCGCCGCTATGAGGGTCCGTCAACCTGGAGATCGTCAGAGACTCCCTCGGCATG
CAGGCGCGGCCATTCACCATGAGGGCCTGTTGAAGATCATCGAGCAGATGGAGAGGAATCTCGACGAGCCAGTAGCGCTT
GAAGACATGGCTGCCTCGAACTGTTTGTCTCGGCGCCAAGTTGAGCGCATCTTTTCGAAACAAATCGGACGTTCGCCTGC
ACGATACTATCTTGAGATGAGACTTGAGCGCGCGCACTTGCTGATCGTGAACTCGCAACTCCCGGTCGTTGAGATCGCGA
TGGCCTGTGGTTTCATCTCGGCCTCACACTTTTCAAAGGCATATCGCGAGAATTATGGAATGACTCCAAGGGAGGCTCGC
TCGGAAGCCGTAGAACGCCGGCGGAACGGGCCTGCCGCCCGACCTACTGGGAATGTTGCTCAGGGCGGCCTTGCAGCCTG
CCACGTGAGGAAACACGCTCAAAACGCTTGA

Upstream 100 bases:

>100_bases
GCAAGAGTTGCATCTGATGCGAGGCCTTTTCGACCCAAAGGGCCTCAGAACCAAAGTCGGACGGGCTCCAGGCCCTCCGA
GAGGCGTTGAGATTCTAAAG

Downstream 100 bases:

>100_bases
TCTTGTTGCCCATGTGGAGTCGCACTTACACCCCCAATCAATCACTTTCTATCACAAGCCATTGTTGGCCAATGTGGATC
GCGCCAATTGTTTATAGCCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MKVAKRLFSLYLWPGFSLQAFSSAVEALRLANEVLETESYAWRVVSDDGHPVRSNSGLTISVDTSLKEERGLRGRMGSFP
SVAVICGGSHPLAVNRALNSWLRDCRARKLCLVGIASGVFSIAQTGLADGRRCAVHWEQFPSFVEQFPGVTAVQSAFEID
GDTYSCSGGDAAFDMFVQFVIEDYDTSIASRVCEKAAAMRVRQPGDRQRLPRHAGAAIHHEGLLKIIEQMERNLDEPVAL
EDMAASNCLSRRQVERIFSKQIGRSPARYYLEMRLERAHLLIVNSQLPVVEIAMACGFISASHFSKAYRENYGMTPREAR
SEAVERRRNGPAARPTGNVAQGGLAACHVRKHAQNA

Sequences:

>Translated_356_residues
MKVAKRLFSLYLWPGFSLQAFSSAVEALRLANEVLETESYAWRVVSDDGHPVRSNSGLTISVDTSLKEERGLRGRMGSFP
SVAVICGGSHPLAVNRALNSWLRDCRARKLCLVGIASGVFSIAQTGLADGRRCAVHWEQFPSFVEQFPGVTAVQSAFEID
GDTYSCSGGDAAFDMFVQFVIEDYDTSIASRVCEKAAAMRVRQPGDRQRLPRHAGAAIHHEGLLKIIEQMERNLDEPVAL
EDMAASNCLSRRQVERIFSKQIGRSPARYYLEMRLERAHLLIVNSQLPVVEIAMACGFISASHFSKAYRENYGMTPREAR
SEAVERRRNGPAARPTGNVAQGGLAACHVRKHAQNA
>Mature_356_residues
MKVAKRLFSLYLWPGFSLQAFSSAVEALRLANEVLETESYAWRVVSDDGHPVRSNSGLTISVDTSLKEERGLRGRMGSFP
SVAVICGGSHPLAVNRALNSWLRDCRARKLCLVGIASGVFSIAQTGLADGRRCAVHWEQFPSFVEQFPGVTAVQSAFEID
GDTYSCSGGDAAFDMFVQFVIEDYDTSIASRVCEKAAAMRVRQPGDRQRLPRHAGAAIHHEGLLKIIEQMERNLDEPVAL
EDMAASNCLSRRQVERIFSKQIGRSPARYYLEMRLERAHLLIVNSQLPVVEIAMACGFISASHFSKAYRENYGMTPREAR
SEAVERRRNGPAARPTGNVAQGGLAACHVRKHAQNA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39286; Mature: 39286

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAKRLFSLYLWPGFSLQAFSSAVEALRLANEVLETESYAWRVVSDDGHPVRSNSGLTI
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCEEE
SVDTSLKEERGLRGRMGSFPSVAVICGGSHPLAVNRALNSWLRDCRARKLCLVGIASGVF
EECCCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIAQTGLADGRRCAVHWEQFPSFVEQFPGVTAVQSAFEIDGDTYSCSGGDAAFDMFVQFV
HHHHHCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHH
IEDYDTSIASRVCEKAAAMRVRQPGDRQRLPRHAGAAIHHEGLLKIIEQMERNLDEPVAL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
EDMAASNCLSRRQVERIFSKQIGRSPARYYLEMRLERAHLLIVNSQLPVVEIAMACGFIS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
ASHFSKAYRENYGMTPREARSEAVERRRNGPAARPTGNVAQGGLAACHVRKHAQNA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKVAKRLFSLYLWPGFSLQAFSSAVEALRLANEVLETESYAWRVVSDDGHPVRSNSGLTI
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCEEE
SVDTSLKEERGLRGRMGSFPSVAVICGGSHPLAVNRALNSWLRDCRARKLCLVGIASGVF
EECCCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIAQTGLADGRRCAVHWEQFPSFVEQFPGVTAVQSAFEIDGDTYSCSGGDAAFDMFVQFV
HHHHHCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHH
IEDYDTSIASRVCEKAAAMRVRQPGDRQRLPRHAGAAIHHEGLLKIIEQMERNLDEPVAL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
EDMAASNCLSRRQVERIFSKQIGRSPARYYLEMRLERAHLLIVNSQLPVVEIAMACGFIS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
ASHFSKAYRENYGMTPREARSEAVERRRNGPAARPTGNVAQGGLAACHVRKHAQNA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]