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The map label for this gene is gabD [H]

Identifier: 13475130

GI number: 13475130

Start: 4970182

End: 4970769

Strand: Reverse

Name: gabD [H]

Synonym: mll6142

Alternate gene names: 13475130

Gene position: 4970769-4970182 (Counterclockwise)

Preceding gene: 13475134

Following gene: 13475126

Centisome position: 70.65

GC content: 64.97

Gene sequence:

>588_bases
ATGCCGCCACTCGGCACGCCGCCTGGCGAGCGAATTTTCGAGGTCTTGATCCATCCACTGGCGACGTGCTGGCGGAAATT
TCCCGACATGGGGTCGAGGAGGCGCGCAGCGGTCGACCAAGCGTATATGGCGCAGGCTGGATGGGCGGCCATGACCGCCC
GGGAGTGCTGCGACATGCTGTGGCGCTGGCATCAGCTGATCATAGACCATGCCGTCGGCCTTGCTGCCATTCTTGACGCG
GAGATGGGCGAGCCGCTTGCGAAGCCAGTTCGAAGTCCCTCACGCGGCCCGCGTATCTGCATTGGTACGCCGAAGGCCAA
TCGTGTCTATGGCGAGACGATCTCCCCCGCCCTCGTCGGACCGGCGCATGCTGGTGGTCAAGCAGCCGGTCGGCGTTGCT
GCCTCGATGGTCGCGCGCAGGATCCCGCCGGTGCTGGCGGCGGGCTGCGCGGTCATCCTCAAACTGCCGAACAGACGCCG
CTTGTTGTTGCAGGCGCAATGATTGCGCTCGCGGCGGAGGCCGGCTTTCCCGAAGGCTTCGTCAACCTGATCTATGCTTG
CAAAGGCGATGCCATCGGCCGCAGCTGA

Upstream 100 bases:

>100_bases
ATCAGCTCGCAGGCTCAACGGCCGATGCCCCCGCCAGGCGTGCCTCTGTGCCAACCGCTTGCACCTGAAATCTGCATAGC
TGTTCGGCGCTATCGACCGC

Downstream 100 bases:

>100_bases
TTAGCCGATGAACTTGATCCACAGGCGCTTGATCCATGCGAGGATGGCCCTGAGCCCCTTTGGCTGGGCGCCGCGTTTGA
GAAGGCGGTCGTAGGCGCGG

Product: succinic semialdehyde dehydrogenase

Products: NA

Alternate protein names: SSDH [H]

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPPLGTPPGERIFEVLIHPLATCWRKFPDMGSRRRAAVDQAYMAQAGWAAMTARECCDMLWRWHQLIIDHAVGLAAILDA
EMGEPLAKPVRSPSRGPRICIGTPKANRVYGETISPALVGPAHAGGQAAGRRCCLDGRAQDPAGAGGGLRGHPQTAEQTP
LVVAGAMIALAAEAGFPEGFVNLIYACKGDAIGRS

Sequences:

>Translated_195_residues
MPPLGTPPGERIFEVLIHPLATCWRKFPDMGSRRRAAVDQAYMAQAGWAAMTARECCDMLWRWHQLIIDHAVGLAAILDA
EMGEPLAKPVRSPSRGPRICIGTPKANRVYGETISPALVGPAHAGGQAAGRRCCLDGRAQDPAGAGGGLRGHPQTAEQTP
LVVAGAMIALAAEAGFPEGFVNLIYACKGDAIGRS
>Mature_194_residues
PPLGTPPGERIFEVLIHPLATCWRKFPDMGSRRRAAVDQAYMAQAGWAAMTARECCDMLWRWHQLIIDHAVGLAAILDAE
MGEPLAKPVRSPSRGPRICIGTPKANRVYGETISPALVGPAHAGGQAAGRRCCLDGRAQDPAGAGGGLRGHPQTAEQTPL
VVAGAMIALAAEAGFPEGFVNLIYACKGDAIGRS

Specific function: Catalyzes the NADP(+) dependent oxidation of succinate semialdehyde to succinate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldehyde dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016161
- InterPro:   IPR016163
- InterPro:   IPR016160
- InterPro:   IPR016162
- InterPro:   IPR015590
- InterPro:   IPR010102 [H]

Pfam domain/function: PF00171 Aldedh [H]

EC number: =1.2.1.79 [H]

Molecular weight: Translated: 20546; Mature: 20415

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLGTPPGERIFEVLIHPLATCWRKFPDMGSRRRAAVDQAYMAQAGWAAMTARECCDML
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRWHQLIIDHAVGLAAILDAEMGEPLAKPVRSPSRGPRICIGTPKANRVYGETISPALVG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHCC
PAHAGGQAAGRRCCLDGRAQDPAGAGGGLRGHPQTAEQTPLVVAGAMIALAAEAGFPEGF
CCCCCCHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
VNLIYACKGDAIGRS
HHHHHHHCCCCCCCC
>Mature Secondary Structure 
PPLGTPPGERIFEVLIHPLATCWRKFPDMGSRRRAAVDQAYMAQAGWAAMTARECCDML
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRWHQLIIDHAVGLAAILDAEMGEPLAKPVRSPSRGPRICIGTPKANRVYGETISPALVG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHCC
PAHAGGQAAGRRCCLDGRAQDPAGAGGGLRGHPQTAEQTPLVVAGAMIALAAEAGFPEGF
CCCCCCHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
VNLIYACKGDAIGRS
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]