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The map label for this gene is ompW [C]

Identifier: 13475117

GI number: 13475117

Start: 4959202

End: 4959894

Strand: Reverse

Name: ompW [C]

Synonym: mll6127

Alternate gene names: 13475117

Gene position: 4959894-4959202 (Counterclockwise)

Preceding gene: 13475118

Following gene: 13475116

Centisome position: 70.49

GC content: 60.89

Gene sequence:

>693_bases
ATGGCGAGAGCGCGAATTGGCGTGGCGCGGGCAATGACAGCGGCTGTCGTCCTCATCGTTGCGGGACAGGCCGGCGCGGC
AGATGTTGGGCAAGCCGCGAGCGTCCCGCAGGCAGAAGCCTGCGTCGCGGAAGCGCCAAGCCCCTGGCAGATCCGTCTGC
GTGCGTTGGGGGTGATCACCGAGGATTCGGGCTATGTCAATGCGGTGCCCGGCTCCGGTCTTTCCTATTCGAACACCGTG
ACGCCGGAACTCGATATTTCGTACTTCTTCACGGACAACATCGCCGCCGAACTCATACTCGGCACCACCTATGCCAACAT
CGATGGCCAAGGTGCGATCGGCGGGCTTGGCAAGGTCGGCAAGGTTTGGCTGCTGCCGCCCACGCTCACATTGCAGTATC
ATTTTACCGATTTCGGCGCCTTCGAGCCCTATATCGGCGCCGGCGTGAACTATACGATCTTCTATCATCAGCAAGTCGGC
AGCGCCGATGATCTCAAGGTCAAGAACACATTCGGCGCCGCGCTGCAGGTCGGATTCGACTACATGGTGGACCAGCACTG
GGGCGTCAACTTCGACGTGAAGAAGCTTTTCCTCAAGCCCGACTTCGACGTCACTGTCGCCGGCGCCAAGCTCACGGGCA
AGGCCAAGCTCGATCCCTGGGTGATAGGCGCAGGTCTGACCTACCGCTTCTGA

Upstream 100 bases:

>100_bases
GGGGGCTATCCCGCATGAGCGCTCCGTCAATCTCGATTGATGCGAGCAGGATTCAATCAAGGCGCAGTGCGTCGCTTCTG
AAGATCAAGGAGAGAAAAGT

Downstream 100 bases:

>100_bases
GGACGAAGCACGGGGCACTTTTCGAAGTCCGCGCGCGGAATCTTCCGTGCCGAGAAGTGGACCCGCGATGGTTCTTAAAG
GAGTTGTTGGCATGCGCGTA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MARARIGVARAMTAAVVLIVAGQAGAADVGQAASVPQAEACVAEAPSPWQIRLRALGVITEDSGYVNAVPGSGLSYSNTV
TPELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVGKVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVG
SADDLKVKNTFGAALQVGFDYMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPWVIGAGLTYRF

Sequences:

>Translated_230_residues
MARARIGVARAMTAAVVLIVAGQAGAADVGQAASVPQAEACVAEAPSPWQIRLRALGVITEDSGYVNAVPGSGLSYSNTV
TPELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVGKVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVG
SADDLKVKNTFGAALQVGFDYMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPWVIGAGLTYRF
>Mature_229_residues
ARARIGVARAMTAAVVLIVAGQAGAADVGQAASVPQAEACVAEAPSPWQIRLRALGVITEDSGYVNAVPGSGLSYSNTVT
PELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVGKVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVGS
ADDLKVKNTFGAALQVGFDYMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPWVIGAGLTYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=165, Percent_Identity=36.3636363636364, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24413; Mature: 24282

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARARIGVARAMTAAVVLIVAGQAGAADVGQAASVPQAEACVAEAPSPWQIRLRALGVIT
CCCCHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
EDSGYVNAVPGSGLSYSNTVTPELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVG
CCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCC
KVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVGSADDLKVKNTFGAALQVGFD
EEEEECCEEEEEEEECCCCCCCCHHCCCCEEEEEEEECCCCCCCEEEECCCCEEEEECEE
YMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPWVIGAGLTYRF
EEEECCCCCCEEEEEEEECCCCCEEEECEEEECCCCCCCEEEECCEEECC
>Mature Secondary Structure 
ARARIGVARAMTAAVVLIVAGQAGAADVGQAASVPQAEACVAEAPSPWQIRLRALGVIT
CCCHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
EDSGYVNAVPGSGLSYSNTVTPELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVG
CCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCC
KVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVGSADDLKVKNTFGAALQVGFD
EEEEECCEEEEEEEECCCCCCCCHHCCCCEEEEEEEECCCCCCCEEEECCCCEEEEECEE
YMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPWVIGAGLTYRF
EEEECCCCCCEEEEEEEECCCCCEEEECEEEECCCCCCCEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]