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The map label for this gene is rhiR [H]

Identifier: 13474692

GI number: 13474692

Start: 4529413

End: 4530144

Strand: Direct

Name: rhiR [H]

Synonym: mlr5637

Alternate gene names: 13474692

Gene position: 4529413-4530144 (Clockwise)

Preceding gene: 13474690

Following gene: 13474693

Centisome position: 64.37

GC content: 61.2

Gene sequence:

>732_bases
ATGGGTCAATTTGATCGTACGCTGGAATACATAGACCAACTGCAACACGCCGGAACGGCGGCGGCGGTCTGCGAGAAACT
GTTGGGCATAACGTCGGATTTCGGTCTGACCGCGCTGATGGCGGGAACCGTCCCGCAGCCAGGCACACCGAGCGAGCAGC
AAAAGCAGCATGTGCTGCTTTGCGACTGGCCTGTCGAATGGCTGGAGCGCTACGTGGCGCGCAACTATGTCGATCACGAT
CCGGTGGTCAGCCACATGAAGCAGTTGCAAGCGCCGTTCCAGTGGCGCGAAGCCGCCCAGGGCATTAGCTTCGACAAGAG
CAGCGGCGAGGTGATGGGCGATGCCGGCGCGTTCAAGCTGCGCGACGGCCTGGCCTTCCCGCTGATCACGTTGGATGGCC
AGATCGTCATGGTGTCGCTGGGTGGCGAGGCCATGCAGTTGTCGGCCGCCGAGTTCGGCCTGGTGTCGCTGGTTTCGACC
TATGCCGTTGGCCGCGCCATGCAACTCCACACCATGGCGACCAAGACCATCGACCATATCGAACTGACCCCGCGCGAGCG
CGAATGCCTGCAATGGGCCGCCGTTGGCAAGTCGGAATGGGAGATTTCGCAAATCCTCGGCATCTCCGAACACACGTCGG
AGAAACATCTTCTTAACGCCAAAAGCAAACTCGGTGCCGTCAACCGGGTCCAGGCGGTCGCCGAAGCGATAAGGCGGGGC
TACATTAGCTAG

Upstream 100 bases:

>100_bases
CCGAGAATGTGCGCGTTGCAATCCGTGGTCGGTGGCCAAATGCAGACAACGCATGGACCATTGATCTCAATGCATGAGGC
AACATGGGGTTGATGTTGCG

Downstream 100 bases:

>100_bases
GTCGGCCGTGCCGACCTAGAATTTCTTGCCTACGTGATCACGCAATTTTCTCGTTGAGGCACGGCCGTATCTTCCTCTTA
AACCCAGGAGACGACGGCAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MGQFDRTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWLERYVARNYVDHD
PVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPLITLDGQIVMVSLGGEAMQLSAAEFGLVSLVST
YAVGRAMQLHTMATKTIDHIELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG
YIS

Sequences:

>Translated_243_residues
MGQFDRTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWLERYVARNYVDHD
PVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPLITLDGQIVMVSLGGEAMQLSAAEFGLVSLVST
YAVGRAMQLHTMATKTIDHIELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG
YIS
>Mature_242_residues
GQFDRTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWLERYVARNYVDHDP
VVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPLITLDGQIVMVSLGGEAMQLSAAEFGLVSLVSTY
AVGRAMQLHTMATKTIDHIELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGY
IS

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26678; Mature: 26547

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQFDRTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHCCEEEE
CDWPVEWLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKL
ECCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEECCCCCEEE
RDGLAFPLITLDGQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHI
CCCCCCEEEEECCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG
ECCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
YIS
CCC
>Mature Secondary Structure 
GQFDRTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLL
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHCCEEEE
CDWPVEWLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKL
ECCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEECCCCCEEE
RDGLAFPLITLDGQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHI
CCCCCCEEEEECCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG
ECCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
YIS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]