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The map label for this gene is ykfC [H]

Identifier: 13474669

GI number: 13474669

Start: 4498666

End: 4499406

Strand: Direct

Name: ykfC [H]

Synonym: mlr5608

Alternate gene names: 13474669

Gene position: 4498666-4499406 (Clockwise)

Preceding gene: 13474668

Following gene: 13474670

Centisome position: 63.94

GC content: 64.78

Gene sequence:

>741_bases
GTGGCCGACATCCGCAAGGCGCCGCGTGCGGATGCCGGCATCAACACACAAGCCCTGTTCGGCGACGATGTGCTGGTTTT
TGAGGATGCCGAAGACTGGGCCTGGATCCAGGCCGAACGCGACGGCTATGTCGGCTATGTCGCCAACACCATGTTGGGCG
GACGCGACCATGCACCCACCCATATCGTCTCGGTGCCCCGCACCTTTCTCTATCCCGGTCCGGATCTGCGCTTTCCGATC
GCGGGACAGCTGTCGATGGGGTCGACGGTGACGGTGACGGGCGCCGCCGAGACGCGCGGCACGCACTATGCCGTCCTGCC
GTCGGGCGAAGCGATCATCGCTGGCCACCTCAGGCCAATCGGAGAAAACGCCGCCGACTATGTCGCGGTTGCCGAGACGT
TTCTTGGCACACCCTATCTGTGGGGCGGCACATCCGGCTTCGGCATCGATTGTTCCGGCCTGGTGCAACTGGCGATGCGC
ATGACGGGCGAAAACGTGCTGCGCGATTCCGACATGCAGGCGGCAAGCGTCGGCGAGCCGCTCGAACCCGGCCCGGACTA
TGCCGGATTGCGCCGGGGCGACCTCGTCTTCTGGAAAGGTCATGTCGCCGTCATGACCGACGCCGAGACCATGATTCATG
CCAACGGCCACACCATGCTGGTCTCGCGCGAAGGCCTGAAGGACGCCATCGCCCGGATAGGCTATCTCTATGGCGGGCCG
ACAGGGTTTCGCAGGCCGTAG

Upstream 100 bases:

>100_bases
TCTCCACGCCTTCCGTTCCGACCTTGCCGACGCAAGGCTGAAAGGCGAGGTTTCTGCCGAGCGCTTTGTCGCCGGCCGGC
CGGCGCGGATCTCGGCCTCG

Downstream 100 bases:

>100_bases
CACAAGCGCCTGTCCTTCCCCCAAAAGGGGAGAAGGGAAGAGCGATCCCCTTTTGTTCCGATTTTCCTTGGCGATCGCCC
GTAGCCGCGCTAACTCTGGC

Product: peptidase/amylase

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MADIRKAPRADAGINTQALFGDDVLVFEDAEDWAWIQAERDGYVGYVANTMLGGRDHAPTHIVSVPRTFLYPGPDLRFPI
AGQLSMGSTVTVTGAAETRGTHYAVLPSGEAIIAGHLRPIGENAADYVAVAETFLGTPYLWGGTSGFGIDCSGLVQLAMR
MTGENVLRDSDMQAASVGEPLEPGPDYAGLRRGDLVFWKGHVAVMTDAETMIHANGHTMLVSREGLKDAIARIGYLYGGP
TGFRRP

Sequences:

>Translated_246_residues
MADIRKAPRADAGINTQALFGDDVLVFEDAEDWAWIQAERDGYVGYVANTMLGGRDHAPTHIVSVPRTFLYPGPDLRFPI
AGQLSMGSTVTVTGAAETRGTHYAVLPSGEAIIAGHLRPIGENAADYVAVAETFLGTPYLWGGTSGFGIDCSGLVQLAMR
MTGENVLRDSDMQAASVGEPLEPGPDYAGLRRGDLVFWKGHVAVMTDAETMIHANGHTMLVSREGLKDAIARIGYLYGGP
TGFRRP
>Mature_245_residues
ADIRKAPRADAGINTQALFGDDVLVFEDAEDWAWIQAERDGYVGYVANTMLGGRDHAPTHIVSVPRTFLYPGPDLRFPIA
GQLSMGSTVTVTGAAETRGTHYAVLPSGEAIIAGHLRPIGENAADYVAVAETFLGTPYLWGGTSGFGIDCSGLVQLAMRM
TGENVLRDSDMQAASVGEPLEPGPDYAGLRRGDLVFWKGHVAVMTDAETMIHANGHTMLVSREGLKDAIARIGYLYGGPT
GFRRP

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 26295; Mature: 26164

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIRKAPRADAGINTQALFGDDVLVFEDAEDWAWIQAERDGYVGYVANTMLGGRDHAPT
CCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCEEEEEEHHCCCCCCCCCE
HIVSVPRTFLYPGPDLRFPIAGQLSMGSTVTVTGAAETRGTHYAVLPSGEAIIAGHLRPI
EEEECCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEECCEEC
GENAADYVAVAETFLGTPYLWGGTSGFGIDCSGLVQLAMRMTGENVLRDSDMQAASVGEP
CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHCCCC
LEPGPDYAGLRRGDLVFWKGHVAVMTDAETMIHANGHTMLVSREGLKDAIARIGYLYGGP
CCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEECCCEEEEECCCHHHHHHHHHHHCCCC
TGFRRP
CCCCCC
>Mature Secondary Structure 
ADIRKAPRADAGINTQALFGDDVLVFEDAEDWAWIQAERDGYVGYVANTMLGGRDHAPT
CCCCCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCEEEEEEHHCCCCCCCCCE
HIVSVPRTFLYPGPDLRFPIAGQLSMGSTVTVTGAAETRGTHYAVLPSGEAIIAGHLRPI
EEEECCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEECCEEC
GENAADYVAVAETFLGTPYLWGGTSGFGIDCSGLVQLAMRMTGENVLRDSDMQAASVGEP
CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHCCCC
LEPGPDYAGLRRGDLVFWKGHVAVMTDAETMIHANGHTMLVSREGLKDAIARIGYLYGGP
CCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEECCCEEEEECCCHHHHHHHHHHHCCCC
TGFRRP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]