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The map label for this gene is 13474622

Identifier: 13474622

GI number: 13474622

Start: 4450789

End: 4451208

Strand: Direct

Name: 13474622

Synonym: mlr5544

Alternate gene names: NA

Gene position: 4450789-4451208 (Clockwise)

Preceding gene: 13474621

Following gene: 13474623

Centisome position: 63.26

GC content: 59.52

Gene sequence:

>420_bases
ATGACAGAAGAAAACAAGAAGAAACCCAATCCCATCGACATCCACGTTGGAAGCCGCGTCCGGCTTCGCCGCAACATGCT
CGGAATGAGCCAGGAAAAGCTGGGCGAAAATCTCGGCATCACATTTCAACAGATCCAGAAATATGAAAAGGGCACCAACC
GCGTCGGCGCCAGCCGGCTGCAGGCGATAGCCTCGATACTCGGCGTGCCCGTCGCCTTCTTCTTCGAGGATGCGCCGGGC
CAGGAAGCGGCGCCCGGTCGCGGCTTTTCCGAGGATGCGTCAATGGCTTTCGCCGTCGAGTTTTGCGGCAGTCCCGAAGG
CCTTCAGCTCAACCGGGCCTTCGTCAAGATCGCCGACGTCAAGGTGCGCCGCAGGATCATCGATCTGGTGAAGTCACTCG
CAGCGGACGACCTGGACTGA

Upstream 100 bases:

>100_bases
AATTTCTCGAAGCCGGTGGATCGTCTGTTGGGGCAGTCGCCTCCGGCTTTTTTTGGGCAGGAAAAAAATCACAAAGCCGA
AAAAATTCGGCGAGGAAAAA

Downstream 100 bases:

>100_bases
CCCTCGATAAGCCTCGAACCGGCGGCATTCGCCGCCGGTGGCACAAGATATCGACATCGACAGTCGTGCCAGAATGGCGG
CAACGCTTGACGAGCGGCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MTEENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIASILGVPVAFFFEDAPG
QEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVRRRIIDLVKSLAADDLD

Sequences:

>Translated_139_residues
MTEENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIASILGVPVAFFFEDAPG
QEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVRRRIIDLVKSLAADDLD
>Mature_138_residues
TEENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIASILGVPVAFFFEDAPGQ
EAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVRRRIIDLVKSLAADDLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15306; Mature: 15175

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRL
CCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCCHHHH
QAIASILGVPVAFFFEDAPGQEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADV
HHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
KVRRRIIDLVKSLAADDLD
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRL
CCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCCHHHH
QAIASILGVPVAFFFEDAPGQEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADV
HHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
KVRRRIIDLVKSLAADDLD
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]