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The map label for this gene is ybeY [C]

Identifier: 13474616

GI number: 13474616

Start: 4444957

End: 4445457

Strand: Direct

Name: ybeY [C]

Synonym: mlr5536

Alternate gene names: 13474616

Gene position: 4444957-4445457 (Clockwise)

Preceding gene: 13474615

Following gene: 13474617

Centisome position: 63.17

GC content: 64.67

Gene sequence:

>501_bases
ATGCCTGAGGACAATTTATCCGGCGACGGGGGGCCCCCCGTCGACATCGATATATCGGTCGAAGCGGGCGACTGGCCCGA
TGAGGCCGGCTTGGCGCGGCTAGTCGACCGCGCGGTTGACGCCGCTTTCGCCGAGACCGGCGTGACAGGCCGTTCCGAGC
TCAGCGTCGTTTTTTCCGACGACGCCCATATCCGGACCCTCAACGCCGAATGGCGCGGCAAGGACAAACCCACCAACGTC
TTGTCTTTCCCGGCTTTTCCGTTCGCACAAGGGGGCCCGCTGCCGCCGATGCTGGGCGATATCGTGCTAGCCGCCGAGAC
GGTTTCCCGCGAGGCGGCACTGGAAGACAAGCCCGTGCAGAACCATATCACCCATCTCGTCATCCACGGCCTGCTGCATT
TGCTGGGCCACGATCACGAGACCGACGCCGAGGCCGAGGCGATGGAGGCGATCGAACGCGCAGCGCTCGCAAGGCTTGCC
ATTCCCGATCCCTACGCGTAA

Upstream 100 bases:

>100_bases
CCGCCATCCGCTGGTGGCGGAAATCGTCAGGGCCTATGACCGCGACGCCAAATTGGCGCGCGGCCTCGGCGCCGAGAATT
GATTTTGACAATGCGGCTTC

Downstream 100 bases:

>100_bases
CTACATCTGACAATTGACCGGACGACGATGAACGACACACCAGAAACTGCCGCCCGCCCCGACGCCGGCAGTGCGCCCAA
GGCTTCCGATACGTCGGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPEDNLSGDGGPPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGRSELSVVFSDDAHIRTLNAEWRGKDKPTNV
LSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITHLVIHGLLHLLGHDHETDAEAEAMEAIERAALARLA
IPDPYA

Sequences:

>Translated_166_residues
MPEDNLSGDGGPPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGRSELSVVFSDDAHIRTLNAEWRGKDKPTNV
LSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITHLVIHGLLHLLGHDHETDAEAEAMEAIERAALARLA
IPDPYA
>Mature_165_residues
PEDNLSGDGGPPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGRSELSVVFSDDAHIRTLNAEWRGKDKPTNVL
SFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITHLVIHGLLHLLGHDHETDAEAEAMEAIERAALARLAI
PDPYA

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=153, Percent_Identity=40.5228758169935, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_RHILO (Q98BK1)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106185.1
- ProteinModelPortal:   Q98BK1
- SMR:   Q98BK1
- GeneID:   1228846
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr5536
- NMPDR:   fig|266835.1.peg.4289
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- ProtClustDB:   CLSK864324
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17685; Mature: 17554

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEDNLSGDGGPPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGRSELSVVFSD
CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
DAHIRTLNAEWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQ
CCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
NHITHLVIHGLLHLLGHDHETDAEAEAMEAIERAALARLAIPDPYA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PEDNLSGDGGPPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGRSELSVVFSD
CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
DAHIRTLNAEWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQ
CCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
NHITHLVIHGLLHLLGHDHETDAEAEAMEAIERAALARLAIPDPYA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968