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The map label for this gene is soxC [H]

Identifier: 13474356

GI number: 13474356

Start: 4156588

End: 4157835

Strand: Direct

Name: soxC [H]

Synonym: mlr5225

Alternate gene names: 13474356

Gene position: 4156588-4157835 (Clockwise)

Preceding gene: 13474355

Following gene: 13474357

Centisome position: 59.08

GC content: 64.34

Gene sequence:

>1248_bases
ATGACCGTCTCGACCGTCAAGACCGACCATGCTTCCGCCGCCGTGCCGCCAGTCGCAAGGCCAGCCGTACCGGCGCACAT
CATCAGGGATGACGCCGAGGCGATTGCGATCGCCCATGCGCTCGCCGCCGAATTCGTCAAGGAGTCGTCCAGGCGCGACC
GCGAGCGGGTCTGGCCAGTCGCCGAACTCGACGCCTTCTCGCAGAGCGGACTGTGGTCGATCAACGTGCCCAAGGCATTC
GGCGGCCCGGAAGTATCCTACGCGACGCTGGCCAAGGTGATCGAGATCATCTCGGCGGCGGATTCCTCGATCGGCCAAAT
CGCGCAGAACCATCTCGGCGTCGTCGCCGCGATCCGCACCGTTTCCGACGCGGACCAGCAGAAGCTGCTGTTCGCCGAGG
TGCTGAACGGCACGCGGTTCGGCAACGCCTTTTCCGAATTCGGTTCCAAGCGCGCCGCCGATTTCGAGACCCGCTTCACC
GATGCGGGCGACCACGTCGTCGTCAATGGCCGCAAATTCTATTCCTCCGGCGCGCTGCTTGCCCATCTGGTGCCGATCGT
GGCGCTCGATGACGAGGGCCGCGCCTGGTATGCGATCGCCGACCGTGGCGCGCCGGGACTGACCGTCATCGACGACTGGT
CGAGCTTTGGCCAGCGCACGACTTTGTCCGGCACCGTCATCATCGACAACGTCAAGGTGCCGAAGACTTTTCTCGTACCC
GGCTACAAGGGCTACGACCGCCCAACCGCCGACGGCGCCATCTTCCAGATCATCCAGGTGGCGGTCGACACGGGTATCGC
CCAGGCGGCCATCGACGAAACGGTTCATTTCGTCAGGACCAGAAGCCGTGCCTGGATCGACAGTGGCGTCGACAATGCCT
GGGACGATCCCTACACGATCCAGGCGGTCGGCGACCTGACGCTGCGCCTGCACGCCGCGCAGGCGCTGCTTGAAAAGGCC
GGTCTGGCGATCGACAAGGCTGTGGCCGAGCCGACGGCCGAGACGGTGGCGCATGCGCAGATCGTCACCGCAGAAGCAAA
AATCCTGTCGACCGAGATCGCGATCGCCGCCACCAACAAGCTGTTCGAACTGGCCGGCACGCGCTCGACGCTGGCCGAGC
ACAATCTCGACAGGCATTGGCGCAATGCCCGCACCCACACGCTGCACGATCCGGTACGCTGGAAGTACTCGATCCTCGGC
AAATATTTCCTCAATGGCGAAAATCCGCCGCTTCACGCCTGGAGCTGA

Upstream 100 bases:

>100_bases
TCTATCTCGGTCAATCGACCACCGGCCAACAGCCCTCGCCGGCTGCCAAACCAGCCCATCTCCATGCCGTCGCTTGAACA
GAATCTCAAGGAGCAGTGAA

Downstream 100 bases:

>100_bases
TTTCCCATCGGCGGGCCGGTGGCCCGCCACTTCAAACTTCGACATCCAAGAGGCCCACTGCCATGTCAAACCCCACAGTC
GTCGGTTTTTCCGGCAACAT

Product: dibenzothiophene desulfurization enzyme

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTVSTVKTDHASAAVPPVARPAVPAHIIRDDAEAIAIAHALAAEFVKESSRRDRERVWPVAELDAFSQSGLWSINVPKAF
GGPEVSYATLAKVIEIISAADSSIGQIAQNHLGVVAAIRTVSDADQQKLLFAEVLNGTRFGNAFSEFGSKRAADFETRFT
DAGDHVVVNGRKFYSSGALLAHLVPIVALDDEGRAWYAIADRGAPGLTVIDDWSSFGQRTTLSGTVIIDNVKVPKTFLVP
GYKGYDRPTADGAIFQIIQVAVDTGIAQAAIDETVHFVRTRSRAWIDSGVDNAWDDPYTIQAVGDLTLRLHAAQALLEKA
GLAIDKAVAEPTAETVAHAQIVTAEAKILSTEIAIAATNKLFELAGTRSTLAEHNLDRHWRNARTHTLHDPVRWKYSILG
KYFLNGENPPLHAWS

Sequences:

>Translated_415_residues
MTVSTVKTDHASAAVPPVARPAVPAHIIRDDAEAIAIAHALAAEFVKESSRRDRERVWPVAELDAFSQSGLWSINVPKAF
GGPEVSYATLAKVIEIISAADSSIGQIAQNHLGVVAAIRTVSDADQQKLLFAEVLNGTRFGNAFSEFGSKRAADFETRFT
DAGDHVVVNGRKFYSSGALLAHLVPIVALDDEGRAWYAIADRGAPGLTVIDDWSSFGQRTTLSGTVIIDNVKVPKTFLVP
GYKGYDRPTADGAIFQIIQVAVDTGIAQAAIDETVHFVRTRSRAWIDSGVDNAWDDPYTIQAVGDLTLRLHAAQALLEKA
GLAIDKAVAEPTAETVAHAQIVTAEAKILSTEIAIAATNKLFELAGTRSTLAEHNLDRHWRNARTHTLHDPVRWKYSILG
KYFLNGENPPLHAWS
>Mature_414_residues
TVSTVKTDHASAAVPPVARPAVPAHIIRDDAEAIAIAHALAAEFVKESSRRDRERVWPVAELDAFSQSGLWSINVPKAFG
GPEVSYATLAKVIEIISAADSSIGQIAQNHLGVVAAIRTVSDADQQKLLFAEVLNGTRFGNAFSEFGSKRAADFETRFTD
AGDHVVVNGRKFYSSGALLAHLVPIVALDDEGRAWYAIADRGAPGLTVIDDWSSFGQRTTLSGTVIIDNVKVPKTFLVPG
YKGYDRPTADGAIFQIIQVAVDTGIAQAAIDETVHFVRTRSRAWIDSGVDNAWDDPYTIQAVGDLTLRLHAAQALLEKAG
LAIDKAVAEPTAETVAHAQIVTAEAKILSTEIAIAATNKLFELAGTRSTLAEHNLDRHWRNARTHTLHDPVRWKYSILGK
YFLNGENPPLHAWS

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557233, Length=366, Percent_Identity=24.3169398907104, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI4501859, Length=349, Percent_Identity=23.7822349570201, Blast_Score=76, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=331, Percent_Identity=24.773413897281, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71990804, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17506239, Length=298, Percent_Identity=22.8187919463087, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21356377, Length=364, Percent_Identity=23.6263736263736, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44869; Mature: 44738

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSTVKTDHASAAVPPVARPAVPAHIIRDDAEAIAIAHALAAEFVKESSRRDRERVWPV
CCCCCEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AELDAFSQSGLWSINVPKAFGGPEVSYATLAKVIEIISAADSSIGQIAQNHLGVVAAIRT
HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VSDADQQKLLFAEVLNGTRFGNAFSEFGSKRAADFETRFTDAGDHVVVNGRKFYSSGALL
HCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHCCCCCCEEEECCEEEECCCCHH
AHLVPIVALDDEGRAWYAIADRGAPGLTVIDDWSSFGQRTTLSGTVIIDNVKVPKTFLVP
HHHEEEEEECCCCCEEEEEECCCCCCCEEEECHHHCCCCEECCCEEEEECCCCCCEEECC
GYKGYDRPTADGAIFQIIQVAVDTGIAQAAIDETVHFVRTRSRAWIDSGVDNAWDDPYTI
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
QAVGDLTLRLHAAQALLEKAGLAIDKAVAEPTAETVAHAQIVTAEAKILSTEIAIAATNK
EEECCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHEEEHHHHHHHHEEEEEEHHH
LFELAGTRSTLAEHNLDRHWRNARTHTLHDPVRWKYSILGKYFLNGENPPLHAWS
HHHHHCCHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCC
>Mature Secondary Structure 
TVSTVKTDHASAAVPPVARPAVPAHIIRDDAEAIAIAHALAAEFVKESSRRDRERVWPV
CCCCEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AELDAFSQSGLWSINVPKAFGGPEVSYATLAKVIEIISAADSSIGQIAQNHLGVVAAIRT
HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VSDADQQKLLFAEVLNGTRFGNAFSEFGSKRAADFETRFTDAGDHVVVNGRKFYSSGALL
HCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHCCCCCCEEEECCEEEECCCCHH
AHLVPIVALDDEGRAWYAIADRGAPGLTVIDDWSSFGQRTTLSGTVIIDNVKVPKTFLVP
HHHEEEEEECCCCCEEEEEECCCCCCCEEEECHHHCCCCEECCCEEEEECCCCCCEEECC
GYKGYDRPTADGAIFQIIQVAVDTGIAQAAIDETVHFVRTRSRAWIDSGVDNAWDDPYTI
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
QAVGDLTLRLHAAQALLEKAGLAIDKAVAEPTAETVAHAQIVTAEAKILSTEIAIAATNK
EEECCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHEEEHHHHHHHHEEEEEEHHH
LFELAGTRSTLAEHNLDRHWRNARTHTLHDPVRWKYSILGKYFLNGENPPLHAWS
HHHHHCCHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]