| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is livF [H]
Identifier: 13474355
GI number: 13474355
Start: 4155758
End: 4156564
Strand: Direct
Name: livF [H]
Synonym: mlr5224
Alternate gene names: 13474355
Gene position: 4155758-4156564 (Clockwise)
Preceding gene: 13474354
Following gene: 13474356
Centisome position: 59.06
GC content: 65.8
Gene sequence:
>807_bases ATGCCGGACAATGACGTCATCCTTGCAGTGGACACGATCCATGCCACCTATAACCACGCCATCACGGCGCTGCATGGCGT CAGCTTCGAGATCCGGCGCGGCGAAATCCTGGCGCTGCTCGGCGCCAACGGCGCCGGCAAGACCACCACGCTGAAGGCAG TCTCCAACCTGTTGCCCGCCGAGCGCGGCCAGGTCAACGCCGGCACCATCTGCTATGACGGCGCCGATGTCTCGCGCCGC AAGCCCGGCGACCTCGTGCGCGCCGGCCTGGTGCCGGTGCTGGAAGGCCGCCACTGCTTCAAAAGCCTCACTGTCGAGGA AAACCTGGTCGCCGGCGGCATCGGCCGCAGCGGCCGCCGTGCCGAGATCAATCAGGACCTTGAGCGGATCTACGCCTATT TCCCCCGGCTGAAAGAAAAGCGCCGGACATTGTCCGGCCTGACCTCAGGCGGCGAACAACAGATGACGGCGATCGGCCGC GCGCTGATGTCGCGGCCGCGCCTGCTGGTCCTCGACGAACCGTCGATGGGGCTCGCCCCACTTATCGTCCAGGACATCTT CCAGACGCTGAGAAAACTGAACCGCGAAACCGGTCTGTCGATCCTGGTCGCCGAGCAGAACTCGGCGGTCGCGCTACGAT ACGCCGACCACGCCACGGTGCTCGAAAACGGCGTCTCCGTTCTCTCCGGCGCCGCTGCCGATCTTCGCCAGCGCGAGGAC GTGCGCGCCTTCTATCTCGGTCAATCGACCACCGGCCAACAGCCCTCGCCGGCTGCCAAACCAGCCCATCTCCATGCCGT CGCTTGA
Upstream 100 bases:
>100_bases CAACGCCGTGACCACCAACTGATCAGCCAATGCCGGGCGCCACGGACAGGTTTCCGCGGCGCCCGGTCCTTACGGTTCTC GAACCGCGGAAGAAGAGCCC
Downstream 100 bases:
>100_bases ACAGAATCTCAAGGAGCAGTGAAATGACCGTCTCGACCGTCAAGACCGACCATGCTTCCGCCGCCGTGCCGCCAGTCGCA AGGCCAGCCGTACCGGCGCA
Product: ABC transporter, ATP-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MPDNDVILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPAERGQVNAGTICYDGADVSRR KPGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRRAEINQDLERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGR ALMSRPRLLVLDEPSMGLAPLIVQDIFQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQRED VRAFYLGQSTTGQQPSPAAKPAHLHAVA
Sequences:
>Translated_268_residues MPDNDVILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPAERGQVNAGTICYDGADVSRR KPGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRRAEINQDLERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGR ALMSRPRLLVLDEPSMGLAPLIVQDIFQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQRED VRAFYLGQSTTGQQPSPAAKPAHLHAVA >Mature_267_residues PDNDVILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPAERGQVNAGTICYDGADVSRRK PGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRRAEINQDLERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGRA LMSRPRLLVLDEPSMGLAPLIVQDIFQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQREDV RAFYLGQSTTGQQPSPAAKPAHLHAVA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=260, Percent_Identity=28.0769230769231, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI9961252, Length=260, Percent_Identity=28.0769230769231, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI4505771, Length=260, Percent_Identity=28.0769230769231, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI27436953, Length=221, Percent_Identity=27.6018099547511, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI153792144, Length=220, Percent_Identity=29.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI11967971, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI47078218, Length=232, Percent_Identity=26.7241379310345, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI148612844, Length=227, Percent_Identity=29.5154185022026, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI45446740, Length=232, Percent_Identity=26.7241379310345, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI255708477, Length=227, Percent_Identity=29.5154185022026, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27477115, Length=221, Percent_Identity=28.9592760180996, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI21536376, Length=211, Percent_Identity=27.4881516587678, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27262624, Length=238, Percent_Identity=26.890756302521, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27262626, Length=238, Percent_Identity=26.890756302521, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI116734710, Length=224, Percent_Identity=27.6785714285714, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI42741659, Length=210, Percent_Identity=30, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9955963, Length=261, Percent_Identity=28.3524904214559, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI87082268, Length=242, Percent_Identity=46.6942148760331, Blast_Score=200, Evalue=8e-53, Organism=Escherichia coli, GI1788225, Length=241, Percent_Identity=32.3651452282158, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=27.7310924369748, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789593, Length=223, Percent_Identity=30.0448430493274, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI48995001, Length=231, Percent_Identity=31.6017316017316, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=30.5676855895196, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=28.6290322580645, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787089, Length=217, Percent_Identity=32.258064516129, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787712, Length=270, Percent_Identity=26.6666666666667, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789672, Length=231, Percent_Identity=25.1082251082251, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787029, Length=203, Percent_Identity=26.6009852216749, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=26.530612244898, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788506, Length=243, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48994943, Length=248, Percent_Identity=27.8225806451613, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=29.6650717703349, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=30.0847457627119, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=29.6803652968037, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081782, Length=243, Percent_Identity=29.2181069958848, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=29.6650717703349, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=246, Percent_Identity=26.0162601626016, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786319, Length=207, Percent_Identity=31.8840579710145, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081709, Length=218, Percent_Identity=26.1467889908257, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788472, Length=246, Percent_Identity=25.2032520325203, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081791, Length=224, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787370, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1788210, Length=208, Percent_Identity=27.4038461538462, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788897, Length=215, Percent_Identity=28.8372093023256, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=26.6949152542373, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789032, Length=230, Percent_Identity=26.5217391304348, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=30.0448430493274, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790162, Length=235, Percent_Identity=24.6808510638298, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI48994883, Length=251, Percent_Identity=25.0996015936255, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=24.812030075188, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786253, Length=230, Percent_Identity=25.6521739130435, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=25.7261410788382, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786703, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786872, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1787105, Length=215, Percent_Identity=26.5116279069767, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1789962, Length=226, Percent_Identity=25.2212389380531, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=240, Percent_Identity=25, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1790467, Length=199, Percent_Identity=25.1256281407035, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790525, Length=201, Percent_Identity=24.8756218905473, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1788644, Length=249, Percent_Identity=28.5140562248996, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=29.6650717703349, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71983516, Length=220, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71983510, Length=220, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17510237, Length=227, Percent_Identity=29.9559471365639, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533608, Length=220, Percent_Identity=28.1818181818182, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71983523, Length=220, Percent_Identity=29.5454545454545, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI25146777, Length=221, Percent_Identity=25.7918552036199, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193211017, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71996809, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193211015, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=224, Percent_Identity=24.5535714285714, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI24582014, Length=211, Percent_Identity=29.8578199052133, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582012, Length=211, Percent_Identity=29.8578199052133, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24650853, Length=180, Percent_Identity=30, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24650855, Length=180, Percent_Identity=30, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574150, Length=195, Percent_Identity=28.7179487179487, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007328, Length=195, Percent_Identity=28.7179487179487, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI281362751, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=25.7009345794392, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574744, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85725262, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136592, Length=252, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI221512771, Length=209, Percent_Identity=24.4019138755981, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=23.9024390243902, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28791; Mature: 28660
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDNDVILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPA CCCCCEEEEEEEEHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCC ERGQVNAGTICYDGADVSRRKPGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRR CCCCCCCCEEEECCCCCCCCCCHHHHHHCCHHHHCCHHHHHHCCCCCCCEECCCCCCCCC AEINQDLERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAP CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHH LIVQDIFQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQRED HHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC VRAFYLGQSTTGQQPSPAAKPAHLHAVA CEEEEECCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure PDNDVILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPA CCCCEEEEEEEEHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCC ERGQVNAGTICYDGADVSRRKPGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRR CCCCCCCCEEEECCCCCCCCCCHHHHHHCCHHHHCCHHHHHHCCCCCCCEECCCCCCCCC AEINQDLERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAP CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHH LIVQDIFQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQRED HHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC VRAFYLGQSTTGQQPSPAAKPAHLHAVA CEEEEECCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]