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The map label for this gene is ycjN [C]

Identifier: 13474116

GI number: 13474116

Start: 3910741

End: 3912051

Strand: Reverse

Name: ycjN [C]

Synonym: mll4927

Alternate gene names: 13474116

Gene position: 3912051-3910741 (Counterclockwise)

Preceding gene: 13474117

Following gene: 13474115

Centisome position: 55.6

GC content: 63.69

Gene sequence:

>1311_bases
ATGAAACTGCGCACGCTCACCCTGGGCTTGTTGTCGGCCAGCGCTCTCGCTTTTGCCGCACATGCCGAATCCATCACCAT
CGCCACGGTCAACAATGGCGATATGGTCCGCATGCAGAAGCTGACCGAGGACTTCACCAAGGCCAACCCCGACATCCAGC
TCAACTGGGTCACTCTTGAAGAGAACGTGCTGCGCGAGCGCGTCACCACCGACATCGCCACCAAGGGCGGCCAGTATGAC
GTGATGACCATCGGCACCTACGAGGTTCCGATCTGGGCCAAGCAGAGCTGGCTGCTGCCGCTCGACAAGCTTGGCGACGA
CTATGACGCCAAGGACATCATCCCGGCCATCGCTGGCGGCCTTTCGGTCGACGGCAAGCTCTATGCCGCGCCCTTCTACG
GCGAAAGCTCCTTCGTCATGTACCGCAAGGACCTGATGGAGAAAGCCGGACTGAAGATGCCCGACGCGCCGACCTGGGAC
TTCATCAAGCAGGCCGCTGACAAGATGACCGACCGCGCCAACGGCGTGAACGGCGTGTGCCTGCGCGGCAAGGCCGGCTG
GGGCGAGAACATGGCCTTCCTGACCGCCATGTCGAACTCCTTCGGCGCCCGCTGGTTCGACGAGAACTGGAAGCCGCAAT
TCGACCAGCCCGAGTGGAAGAAGACCTTGCAGTTCTATGTCGACCTGATGAAGGCCGACGGCCCCGAGGGCGCGTCCTCG
AACGGCTTCAACGAAAACCTGGCGCTGTTCCAGCAGGGCAAGTGCGGCATGTGGATCGACGCCACCGTCGCGGCGTCCTT
CGTCTCCGATCCCAAGGCATCCAAGGTCGCCGACAAGGTCGGCTACGCGCTGGCGCCCGACAATGGCCTGGGCAAGCGCG
GCAACTGGCTGTGGGCATGGTCGCTCGCCGTCCCGGCCGGCACCAAGAAGGCCGACGCCGCCGAGAAGTTCGTGTCGTGG
GCGACCAGCAAGCACTATGCCGAACTCGTCGCTTCGAAGGAAGGCTGGGCCAACGTTCCTCCGGGTACGCGCTCCTCGCT
CTACGCCAATGCCGAGTACCAGAAGGCGGCTCCGTTCGCCAAGATGACGCTGGACTCCATCAACGCCGCCGACCCGACGC
ATCCGACCGTCAAGCCGGTGCCTTATGTCGGTGTCCAGTTCGTAGCCATCCCTGAATTCCAGGGTCTTGGCACCACGGTC
GGCCAGCTCTTCTCGGCGGCTCTTGCCGGCCAGTCGAGCGTCGACGACGCGCTGAAGCAGGCCCAGGACGCCGCCACCGC
GGCGATGACCGAAGGCGGGTATATCAAGTAA

Upstream 100 bases:

>100_bases
CTGCGCTGCAGCATCGAATCCGGCTTGACATATTTCACGGTAAGTGAGTAATTGCTCACAGCCAAGGCAAATGCTCATCT
TGGTTCATGGGAGGAATTTG

Downstream 100 bases:

>100_bases
GGCTCCTCCCGGTGCCGAATGCCGGTTGCCTCCTCGACCGGCAACGGCCGCCCGAGTTCCCAGCTCGGGCGGCCGCCTTC
AACGCCTCTGAAAATTCAGT

Product: periplasmic sorbitol-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MKLRTLTLGLLSASALAFAAHAESITIATVNNGDMVRMQKLTEDFTKANPDIQLNWVTLEENVLRERVTTDIATKGGQYD
VMTIGTYEVPIWAKQSWLLPLDKLGDDYDAKDIIPAIAGGLSVDGKLYAAPFYGESSFVMYRKDLMEKAGLKMPDAPTWD
FIKQAADKMTDRANGVNGVCLRGKAGWGENMAFLTAMSNSFGARWFDENWKPQFDQPEWKKTLQFYVDLMKADGPEGASS
NGFNENLALFQQGKCGMWIDATVAASFVSDPKASKVADKVGYALAPDNGLGKRGNWLWAWSLAVPAGTKKADAAEKFVSW
ATSKHYAELVASKEGWANVPPGTRSSLYANAEYQKAAPFAKMTLDSINAADPTHPTVKPVPYVGVQFVAIPEFQGLGTTV
GQLFSAALAGQSSVDDALKQAQDAATAAMTEGGYIK

Sequences:

>Translated_436_residues
MKLRTLTLGLLSASALAFAAHAESITIATVNNGDMVRMQKLTEDFTKANPDIQLNWVTLEENVLRERVTTDIATKGGQYD
VMTIGTYEVPIWAKQSWLLPLDKLGDDYDAKDIIPAIAGGLSVDGKLYAAPFYGESSFVMYRKDLMEKAGLKMPDAPTWD
FIKQAADKMTDRANGVNGVCLRGKAGWGENMAFLTAMSNSFGARWFDENWKPQFDQPEWKKTLQFYVDLMKADGPEGASS
NGFNENLALFQQGKCGMWIDATVAASFVSDPKASKVADKVGYALAPDNGLGKRGNWLWAWSLAVPAGTKKADAAEKFVSW
ATSKHYAELVASKEGWANVPPGTRSSLYANAEYQKAAPFAKMTLDSINAADPTHPTVKPVPYVGVQFVAIPEFQGLGTTV
GQLFSAALAGQSSVDDALKQAQDAATAAMTEGGYIK
>Mature_436_residues
MKLRTLTLGLLSASALAFAAHAESITIATVNNGDMVRMQKLTEDFTKANPDIQLNWVTLEENVLRERVTTDIATKGGQYD
VMTIGTYEVPIWAKQSWLLPLDKLGDDYDAKDIIPAIAGGLSVDGKLYAAPFYGESSFVMYRKDLMEKAGLKMPDAPTWD
FIKQAADKMTDRANGVNGVCLRGKAGWGENMAFLTAMSNSFGARWFDENWKPQFDQPEWKKTLQFYVDLMKADGPEGASS
NGFNENLALFQQGKCGMWIDATVAASFVSDPKASKVADKVGYALAPDNGLGKRGNWLWAWSLAVPAGTKKADAAEKFVSW
ATSKHYAELVASKEGWANVPPGTRSSLYANAEYQKAAPFAKMTLDSINAADPTHPTVKPVPYVGVQFVAIPEFQGLGTTV
GQLFSAALAGQSSVDDALKQAQDAATAAMTEGGYIK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=344, Percent_Identity=25.8720930232558, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47250; Mature: 47250

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRTLTLGLLSASALAFAAHAESITIATVNNGDMVRMQKLTEDFTKANPDIQLNWVTLE
CCEEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHCCCCEEEEEEECC
ENVLRERVTTDIATKGGQYDVMTIGTYEVPIWAKQSWLLPLDKLGDDYDAKDIIPAIAGG
HHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEECCCCCCCHHHCCCCCCHHHHHHHHHCC
LSVDGKLYAAPFYGESSFVMYRKDLMEKAGLKMPDAPTWDFIKQAADKMTDRANGVNGVC
CCCCCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
LRGKAGWGENMAFLTAMSNSFGARWFDENWKPQFDQPEWKKTLQFYVDLMKADGPEGASS
EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
NGFNENLALFQQGKCGMWIDATVAASFVSDPKASKVADKVGYALAPDNGLGKRGNWLWAW
CCCCCCHHEEECCCCCEEEEHHHHHHHHCCCCHHHHHHHHCEEECCCCCCCCCCCEEEEE
SLAVPAGTKKADAAEKFVSWATSKHYAELVASKEGWANVPPGTRSSLYANAEYQKAAPFA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHCCHH
KMTLDSINAADPTHPTVKPVPYVGVQFVAIPEFQGLGTTVGQLFSAALAGQSSVDDALKQ
HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
AQDAATAAMTEGGYIK
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLRTLTLGLLSASALAFAAHAESITIATVNNGDMVRMQKLTEDFTKANPDIQLNWVTLE
CCEEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHCCCCEEEEEEECC
ENVLRERVTTDIATKGGQYDVMTIGTYEVPIWAKQSWLLPLDKLGDDYDAKDIIPAIAGG
HHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEECCCCCCCHHHCCCCCCHHHHHHHHHCC
LSVDGKLYAAPFYGESSFVMYRKDLMEKAGLKMPDAPTWDFIKQAADKMTDRANGVNGVC
CCCCCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
LRGKAGWGENMAFLTAMSNSFGARWFDENWKPQFDQPEWKKTLQFYVDLMKADGPEGASS
EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
NGFNENLALFQQGKCGMWIDATVAASFVSDPKASKVADKVGYALAPDNGLGKRGNWLWAW
CCCCCCHHEEECCCCCEEEEHHHHHHHHCCCCHHHHHHHHCEEECCCCCCCCCCCEEEEE
SLAVPAGTKKADAAEKFVSWATSKHYAELVASKEGWANVPPGTRSSLYANAEYQKAAPFA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHCCHH
KMTLDSINAADPTHPTVKPVPYVGVQFVAIPEFQGLGTTVGQLFSAALAGQSSVDDALKQ
HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
AQDAATAAMTEGGYIK
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]