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The map label for this gene is yckA [H]

Identifier: 13474098

GI number: 13474098

Start: 3891918

End: 3892565

Strand: Direct

Name: yckA [H]

Synonym: mlr4899

Alternate gene names: 13474098

Gene position: 3891918-3892565 (Clockwise)

Preceding gene: 13474097

Following gene: 13474100

Centisome position: 55.31

GC content: 64.04

Gene sequence:

>648_bases
ATGATCGAGTTCACCCTCTGGGACATCGTGCGCAACCTTCTGCTGGCCACGCGATGGACGGTGCTGTTGTCGCTGGCGGC
TTTCGTCGGCGGCGCGCTGGTCGGCATGGCGGTGCTGTTCTTCCGGATCTCCAAGCATAAATGGAGCCGCCGCCTTGCCT
CGGGCTATATCGCCCTGTTCCAGGGGACGCCGCTGTTGATGCAGCTGTTCCTGATGTTCTTCGGCCTGCCGATGCTCGGT
CTGCGCATCGAGCCCTGGACCGCGGCGGTGCTCGGCCTCACCTTCTTCGCCAGCGCCTATCTCGCCGAGATCTGGCGCTC
GGGCGTCGATGCCTTGCCGCGCGGCCAGTGGGACGCCGGCGCCAGCCTCGGCCTGCACTATCTGCAGGAGCTCAGGTTGA
TCATCCTGCCGCAGGCATTCTCGATCACCCGCGCGCCGACGGTCGGCTTCCTGGTGCAGCTGATCAAGTCGACGGCGCTG
ACCTCGATCATCGGCTTCGAGGAACTGGTGCGGACCTCCAACGCCATCAACAACGCCACTTTCGAACCGTTCAAGGTCTA
CGGGCTGGTGGCACTGATCTTCTTCCTCATGTGCTTCCCGCTGACGCAATATGCGCGTTCGCTCGAAAAGCGTGCGGCGG
CCCGCTAG

Upstream 100 bases:

>100_bases
AGACCTATTTCGTCGTGACGCTGGTCTACCTCGCAATGTCGATGGCCTTGCGTCGGCTCCTGGTCACCGGCGGCCGCCGC
GCGCTCGGAGCGGGCGTGTC

Downstream 100 bases:

>100_bases
ATCTTGTAGCAATAACGGAGGTGGGGCGGACAACAGCCTGTCCGCCGCCACCCCAAGCGCTATTTCAGAGGCAGGAACAG
CTCAACGAGCACTTCGTGCA

Product: amino acid ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIEFTLWDIVRNLLLATRWTVLLSLAAFVGGALVGMAVLFFRISKHKWSRRLASGYIALFQGTPLLMQLFLMFFGLPMLG
LRIEPWTAAVLGLTFFASAYLAEIWRSGVDALPRGQWDAGASLGLHYLQELRLIILPQAFSITRAPTVGFLVQLIKSTAL
TSIIGFEELVRTSNAINNATFEPFKVYGLVALIFFLMCFPLTQYARSLEKRAAAR

Sequences:

>Translated_215_residues
MIEFTLWDIVRNLLLATRWTVLLSLAAFVGGALVGMAVLFFRISKHKWSRRLASGYIALFQGTPLLMQLFLMFFGLPMLG
LRIEPWTAAVLGLTFFASAYLAEIWRSGVDALPRGQWDAGASLGLHYLQELRLIILPQAFSITRAPTVGFLVQLIKSTAL
TSIIGFEELVRTSNAINNATFEPFKVYGLVALIFFLMCFPLTQYARSLEKRAAAR
>Mature_215_residues
MIEFTLWDIVRNLLLATRWTVLLSLAAFVGGALVGMAVLFFRISKHKWSRRLASGYIALFQGTPLLMQLFLMFFGLPMLG
LRIEPWTAAVLGLTFFASAYLAEIWRSGVDALPRGQWDAGASLGLHYLQELRLIILPQAFSITRAPTVGFLVQLIKSTAL
TSIIGFEELVRTSNAINNATFEPFKVYGLVALIFFLMCFPLTQYARSLEKRAAAR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=204, Percent_Identity=34.3137254901961, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082239, Length=201, Percent_Identity=32.8358208955224, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787086, Length=173, Percent_Identity=32.3699421965318, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=28.7128712871287, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788646, Length=192, Percent_Identity=30.2083333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786874, Length=191, Percent_Identity=25.130890052356, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786873, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI48994930, Length=136, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787087, Length=214, Percent_Identity=26.6355140186916, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24054; Mature: 24054

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEFTLWDIVRNLLLATRWTVLLSLAAFVGGALVGMAVLFFRISKHKWSRRLASGYIALF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGTPLLMQLFLMFFGLPMLGLRIEPWTAAVLGLTFFASAYLAEIWRSGVDALPRGQWDAG
CCCHHHHHHHHHHHCCHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ASLGLHYLQELRLIILPQAFSITRAPTVGFLVQLIKSTALTSIIGFEELVRTSNAINNAT
HHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FEPFKVYGLVALIFFLMCFPLTQYARSLEKRAAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEFTLWDIVRNLLLATRWTVLLSLAAFVGGALVGMAVLFFRISKHKWSRRLASGYIALF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGTPLLMQLFLMFFGLPMLGLRIEPWTAAVLGLTFFASAYLAEIWRSGVDALPRGQWDAG
CCCHHHHHHHHHHHCCHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ASLGLHYLQELRLIILPQAFSITRAPTVGFLVQLIKSTALTSIIGFEELVRTSNAINNAT
HHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FEPFKVYGLVALIFFLMCFPLTQYARSLEKRAAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]