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The map label for this gene is yecS [H]

Identifier: 13474097

GI number: 13474097

Start: 3891265

End: 3891921

Strand: Direct

Name: yecS [H]

Synonym: mlr4898

Alternate gene names: 13474097

Gene position: 3891265-3891921 (Clockwise)

Preceding gene: 13474096

Following gene: 13474098

Centisome position: 55.3

GC content: 67.12

Gene sequence:

>657_bases
GTGGCCTTTGCCTGGCTCCCAGGTGCCTTGGGCGACATCGCGCACGGCGCGGCCACGACGATCCTGCTGATCGCCGTGAC
CACGCTGGCCGGCACGCTGCTCAGCATCCTGGGCGCCGCCGGACGGCGAAACGGCCCGGTGCTGCTGCGCCACGCCATCG
CCTGGTATGTCGAGGTGATGCGCAACACGCCGTTCCTGGTGCAGCTGTTCTTCATCTTCTTCGGCCTGCCCAGCCTCGGC
ATCCGGCTCGATCCGATCCTGGCCGCCATGCTGGCCATGACGCTCAACATGGCGGCCTATACGATCGAGATCGTCGGCGC
CGGGCTCGATGCCGTGCCGGGCGGGCAGACGGAAGCAGCCCTGGCGCTGGGGCTGCGGCCCCGCCAGGTGTTCATCAAGA
TCGTGCTGCCGCAGGCGCTCAAGATCATCTATCCGGCGCTCACCAGCCAGATCGTCATCATGATGCTGGAATCGGCCGTT
GTCTCGCAGATCGCGGTGCGCGAGCTGACCTATGAGGCCGACATGCTGCAGGCGCGCACCTTCCGGTCCTTCGAGACCTA
TTTCGTCGTGACGCTGGTCTACCTCGCAATGTCGATGGCCTTGCGTCGGCTCCTGGTCACCGGCGGCCGCCGCGCGCTCG
GAGCGGGCGTGTCATGA

Upstream 100 bases:

>100_bases
CCATCGCCAAGATGCTGGCAGACGGCAAGCTGGACGAAAGCTCGAAAGCCTGGCTGAAGACGCCGCTCAACCCAGATAAC
CTCAAGGATTGAGTTCTCCC

Downstream 100 bases:

>100_bases
TCGAGTTCACCCTCTGGGACATCGTGCGCAACCTTCTGCTGGCCACGCGATGGACGGTGCTGTTGTCGCTGGCGGCTTTC
GTCGGCGGCGCGCTGGTCGG

Product: amino acid ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MAFAWLPGALGDIAHGAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVMRNTPFLVQLFFIFFGLPSLG
IRLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAALALGLRPRQVFIKIVLPQALKIIYPALTSQIVIMMLESAV
VSQIAVRELTYEADMLQARTFRSFETYFVVTLVYLAMSMALRRLLVTGGRRALGAGVS

Sequences:

>Translated_218_residues
MAFAWLPGALGDIAHGAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVMRNTPFLVQLFFIFFGLPSLG
IRLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAALALGLRPRQVFIKIVLPQALKIIYPALTSQIVIMMLESAV
VSQIAVRELTYEADMLQARTFRSFETYFVVTLVYLAMSMALRRLLVTGGRRALGAGVS
>Mature_217_residues
AFAWLPGALGDIAHGAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVMRNTPFLVQLFFIFFGLPSLGI
RLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAALALGLRPRQVFIKIVLPQALKIIYPALTSQIVIMMLESAVV
SQIAVRELTYEADMLQARTFRSFETYFVVTLVYLAMSMALRRLLVTGGRRALGAGVS

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=149, Percent_Identity=36.241610738255, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=34.2723004694836, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=29.3269230769231, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786874, Length=175, Percent_Identity=30.8571428571429, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787087, Length=167, Percent_Identity=27.5449101796407, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082239, Length=195, Percent_Identity=31.2820512820513, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788646, Length=217, Percent_Identity=25.3456221198157, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994930, Length=160, Percent_Identity=33.125, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787086, Length=136, Percent_Identity=28.6764705882353, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1786873, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23418; Mature: 23287

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFAWLPGALGDIAHGAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVM
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
RNTPFLVQLFFIFFGLPSLGIRLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAA
HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHH
LALGLRPRQVFIKIVLPQALKIIYPALTSQIVIMMLESAVVSQIAVRELTYEADMLQART
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRSFETYFVVTLVYLAMSMALRRLLVTGGRRALGAGVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure 
AFAWLPGALGDIAHGAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVM
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
RNTPFLVQLFFIFFGLPSLGIRLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAA
HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHH
LALGLRPRQVFIKIVLPQALKIIYPALTSQIVIMMLESAVVSQIAVRELTYEADMLQART
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRSFETYFVVTLVYLAMSMALRRLLVTGGRRALGAGVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]