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The map label for this gene is ycgE [H]

Identifier: 13474048

GI number: 13474048

Start: 3844321

End: 3844815

Strand: Reverse

Name: ycgE [H]

Synonym: mll4834

Alternate gene names: 13474048

Gene position: 3844815-3844321 (Counterclockwise)

Preceding gene: 13474051

Following gene: 13474046

Centisome position: 54.64

GC content: 67.47

Gene sequence:

>495_bases
ATGATCGAAGTAAATTCGTCAAGCGGATATCGCGACGAAATGGCGGCCGCGATCGGCCTTGCCGTGATGCAATGGCAGGA
CGCGACGCAGGCCTATGACGAGGCGGTCGGGGCGAGGCTCGGGCTGAACATGGCCGAGCGCCATTGCATCGGGCTGCTTT
ATGGCGGCCCGCAATCGGCTGGCGCGATCGCGACCGCGACCGGGCTGACACCGGCGGCCGTGACGGCGCTGATCGACCGG
CTGGAGGCGCGCGGGCTGCTGACGCGCAAGCGCAGCCTCGAGGACAGGCGCAAGGTGGTGATCGAAGCGACCGAGGCGAC
GCGGGAACTGTCGGCGCGCTATTACGGCGCCATCGCCAAGGAGGGCGAAAAGGTGATCGCCACATTCAGCGACGCCGAGC
TCGCGACCATATCGCGCTTCGTCACTGCCGCGCTCGACCTGCAGCGTGCCCAGCTTGCGCGGCTGAAGGCCGAGGGGTCG
GACACCCCTGGATGA

Upstream 100 bases:

>100_bases
GCTCATTTTTCACTCCTTGTCGGCGGCCGGCCCTTGCCTTGTCGGCGCTGCGGCCGCATATTGCTGCGATAGTCTAAATG
TTAGACGGATTAATAGTTAG

Downstream 100 bases:

>100_bases
TAGGGGTGCGATGTGTTGGCGGCGTTACCGCTAATGTCGGCGGGCAACGGGACTATTTCGGCTGGACCCCATAGACGGCA
AGAAATGCCTCCACCGAGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MIEVNSSSGYRDEMAAAIGLAVMQWQDATQAYDEAVGARLGLNMAERHCIGLLYGGPQSAGAIATATGLTPAAVTALIDR
LEARGLLTRKRSLEDRRKVVIEATEATRELSARYYGAIAKEGEKVIATFSDAELATISRFVTAALDLQRAQLARLKAEGS
DTPG

Sequences:

>Translated_164_residues
MIEVNSSSGYRDEMAAAIGLAVMQWQDATQAYDEAVGARLGLNMAERHCIGLLYGGPQSAGAIATATGLTPAAVTALIDR
LEARGLLTRKRSLEDRRKVVIEATEATRELSARYYGAIAKEGEKVIATFSDAELATISRFVTAALDLQRAQLARLKAEGS
DTPG
>Mature_164_residues
MIEVNSSSGYRDEMAAAIGLAVMQWQDATQAYDEAVGARLGLNMAERHCIGLLYGGPQSAGAIATATGLTPAAVTALIDR
LEARGLLTRKRSLEDRRKVVIEATEATRELSARYYGAIAKEGEKVIATFSDAELATISRFVTAALDLQRAQLARLKAEGS
DTPG

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17458; Mature: 17458

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEVNSSSGYRDEMAAAIGLAVMQWQDATQAYDEAVGARLGLNMAERHCIGLLYGGPQSA
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCC
GAIATATGLTPAAVTALIDRLEARGLLTRKRSLEDRRKVVIEATEATRELSARYYGAIAK
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHH
EGEKVIATFSDAELATISRFVTAALDLQRAQLARLKAEGSDTPG
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIEVNSSSGYRDEMAAAIGLAVMQWQDATQAYDEAVGARLGLNMAERHCIGLLYGGPQSA
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCC
GAIATATGLTPAAVTALIDRLEARGLLTRKRSLEDRRKVVIEATEATRELSARYYGAIAK
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHH
EGEKVIATFSDAELATISRFVTAALDLQRAQLARLKAEGSDTPG
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]