Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 13473973

GI number: 13473973

Start: 3761339

End: 3762688

Strand: Direct

Name: yciR [C]

Synonym: mlr4740

Alternate gene names: 13473973

Gene position: 3761339-3762688 (Clockwise)

Preceding gene: 13473972

Following gene: 13473974

Centisome position: 53.46

GC content: 66.15

Gene sequence:

>1350_bases
ATGCAAACTCCGTTTGGCACCGGTCAGGCAAACAGGGAGAGCACGGATCTGGCCTTCACCGATCCGTTGACCGGGCTTGG
CAACCATCGCCGCTTCTTCGACAAGGTCGATCGCCTGATCAGCGACCGCGCCGACGATCCCGCGCCCTTCACCGTCGGCA
TTCTCGACCTCGACGGCTTCAAGCCGATCAACGATCTGTTCGGCCACAAGGCCGGCGACGATATCCTGATCCAGGTCGCC
ATGCGGCTGCGCGCCTCGATGGACGGCCATTCGACGGTCTGCCGCATCGGCGCCGACGAATTCGCCTTCCTCTATCCGCT
GGTGTTCTCCGAGGAAGCGGCGGCGGAAAAATCCCGCATGCTGATCGAGATCCTGTCGGCGCCCTACGATGTCGGCGAAC
GCACCGCCAGGCTGTCGGCCTCGGTCGGCTGCTCGCTGTTCTCTTCCGGCGACGAGACCACCGAGATCCTCATCAACAAG
GCCGAGACGGCGCTCTACCACGCCAAGCGTTCCGGCCGTGGCCGGGTCGTCGTCTACACCCGCGAAATGGAAGAGGCGGC
CAAGCGCGTCACCCGCATCGAGCAGGCGCTGCGCCGCGCCGTCTCGGCCGGCGAGGTGGAGCCGCATTTCCAGCCGATCG
TCGACCTCACCACGCGCCGCACCATCGGCTTCGAGACGCTGGCGCGCTGGACCGATCGTGACCTCGGTGCGGTGCCGCCG
ACGGTCTTCATCCCCATCGCCGAGGAACGCGGCATCATCGGTCCGCTGTCGCAGCTGGTGCTGCGCAAGGCGACCGAGGC
GGCCCGGAGCTGGCCGAGCGACCTGTTCCTGTCCTTCAACCTGTCACCGTCGCAGCTCGTCGACCAGAACACCGGCCTGC
ACATATTGGCGATCCTCGACCGCACCGGCTTCGATCCGCGTCGGCTGGAGATCGAGATCACCGAGACCGGCCTGATGAAC
GACCCGGCCTCGGCCGCGCAGATCGTCGAGGATCTGCGCCGCGTCGGCATCCGCGTCTCGCTCGACGATTTCGGCACCGG
CCAGTCTTCGCTCGGCCGCCTGCGCGAATTCCATTTCGACAAGCTCAAGATCGACCGCGCCTTCGTCTCCTCCATTCTCG
ACGACCGCCCGTCCGAACACATCATCCGCGCCATTCTCGCCATGTGCGAAGGGCTTGGCATGGATGTGGTCGCCGAAGGC
ATAGAAGAGGAAGCGCAGGCCGATCGCCTGGTCCAGTTCGGCTGCGCCGGCGGGCAGGGCTATCTGTTCGGCAAGCCGGT
CGATGCCGACGCCACGCTCGGCTATCTCCGCGATTCCTTCCGCGGCGCCCTGCGCGCCAAGGCGATCTGA

Upstream 100 bases:

>100_bases
TCGCGTCCCGGCCGCGAAAAATCGATTTTCGAGATACGTTTCCTAAAGGGTTTGCTGGCAGTCTCCGACATAAATTCCGA
CGTCAAAAACAGGGACACCG

Downstream 100 bases:

>100_bases
CCGGCGATTTCGACGCAATCGACATTCCGCCGATGTCGCGGCGCGCTTCCAGTGCGGCGCATTGTCGTTTTGTCCGACAT
AAGCCTGAAAATCCGACGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MQTPFGTGQANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDPAPFTVGILDLDGFKPINDLFGHKAGDDILIQVA
MRLRASMDGHSTVCRIGADEFAFLYPLVFSEEAAAEKSRMLIEILSAPYDVGERTARLSASVGCSLFSSGDETTEILINK
AETALYHAKRSGRGRVVVYTREMEEAAKRVTRIEQALRRAVSAGEVEPHFQPIVDLTTRRTIGFETLARWTDRDLGAVPP
TVFIPIAEERGIIGPLSQLVLRKATEAARSWPSDLFLSFNLSPSQLVDQNTGLHILAILDRTGFDPRRLEIEITETGLMN
DPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFDKLKIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEG
IEEEAQADRLVQFGCAGGQGYLFGKPVDADATLGYLRDSFRGALRAKAI

Sequences:

>Translated_449_residues
MQTPFGTGQANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDPAPFTVGILDLDGFKPINDLFGHKAGDDILIQVA
MRLRASMDGHSTVCRIGADEFAFLYPLVFSEEAAAEKSRMLIEILSAPYDVGERTARLSASVGCSLFSSGDETTEILINK
AETALYHAKRSGRGRVVVYTREMEEAAKRVTRIEQALRRAVSAGEVEPHFQPIVDLTTRRTIGFETLARWTDRDLGAVPP
TVFIPIAEERGIIGPLSQLVLRKATEAARSWPSDLFLSFNLSPSQLVDQNTGLHILAILDRTGFDPRRLEIEITETGLMN
DPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFDKLKIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEG
IEEEAQADRLVQFGCAGGQGYLFGKPVDADATLGYLRDSFRGALRAKAI
>Mature_449_residues
MQTPFGTGQANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDPAPFTVGILDLDGFKPINDLFGHKAGDDILIQVA
MRLRASMDGHSTVCRIGADEFAFLYPLVFSEEAAAEKSRMLIEILSAPYDVGERTARLSASVGCSLFSSGDETTEILINK
AETALYHAKRSGRGRVVVYTREMEEAAKRVTRIEQALRRAVSAGEVEPHFQPIVDLTTRRTIGFETLARWTDRDLGAVPP
TVFIPIAEERGIIGPLSQLVLRKATEAARSWPSDLFLSFNLSPSQLVDQNTGLHILAILDRTGFDPRRLEIEITETGLMN
DPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFDKLKIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEG
IEEEAQADRLVQFGCAGGQGYLFGKPVDADATLGYLRDSFRGALRAKAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=419, Percent_Identity=33.4128878281623, Blast_Score=224, Evalue=6e-60,
Organism=Escherichia coli, GI87081921, Length=423, Percent_Identity=29.3144208037825, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1787055, Length=390, Percent_Identity=27.9487179487179, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI226510982, Length=422, Percent_Identity=26.5402843601896, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=35.2941176470588, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=33.8842975206612, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=32.7659574468085, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=29.3650793650794, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=30, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=32.8947368421053, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=27.9527559055118, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082096, Length=426, Percent_Identity=24.4131455399061, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788381, Length=402, Percent_Identity=24.6268656716418, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=36.0248447204969, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=37.6543209876543, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=29.2397660818713, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=181, Percent_Identity=30.3867403314917, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789650, Length=423, Percent_Identity=21.2765957446809, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=27.1493212669683, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=32.0987654320988, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=30.8641975308642, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=93, Percent_Identity=39.7849462365591, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=133, Percent_Identity=33.0827067669173, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=28.6624203821656, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 49413; Mature: 49413

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTPFGTGQANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDPAPFTVGILDLDGF
CCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
KPINDLFGHKAGDDILIQVAMRLRASMDGHSTVCRIGADEFAFLYPLVFSEEAAAEKSRM
CCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHH
LIEILSAPYDVGERTARLSASVGCSLFSSGDETTEILINKAETALYHAKRSGRGRVVVYT
HHHHHHCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
REMEEAAKRVTRIEQALRRAVSAGEVEPHFQPIVDLTTRRTIGFETLARWTDRDLGAVPP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
TVFIPIAEERGIIGPLSQLVLRKATEAARSWPSDLFLSFNLSPSQLVDQNTGLHILAILD
EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCEEEEEEEE
RTGFDPRRLEIEITETGLMNDPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFD
CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
KLKIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEGIEEEAQADRLVQFGCAGGQG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
YLFGKPVDADATLGYLRDSFRGALRAKAI
CEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTPFGTGQANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDPAPFTVGILDLDGF
CCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
KPINDLFGHKAGDDILIQVAMRLRASMDGHSTVCRIGADEFAFLYPLVFSEEAAAEKSRM
CCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHH
LIEILSAPYDVGERTARLSASVGCSLFSSGDETTEILINKAETALYHAKRSGRGRVVVYT
HHHHHHCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
REMEEAAKRVTRIEQALRRAVSAGEVEPHFQPIVDLTTRRTIGFETLARWTDRDLGAVPP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
TVFIPIAEERGIIGPLSQLVLRKATEAARSWPSDLFLSFNLSPSQLVDQNTGLHILAILD
EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCEEEEEEEE
RTGFDPRRLEIEITETGLMNDPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFD
CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
KLKIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEGIEEEAQADRLVQFGCAGGQG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
YLFGKPVDADATLGYLRDSFRGALRAKAI
CEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]