| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is kduD [H]
Identifier: 13473452
GI number: 13473452
Start: 3241008
End: 3241784
Strand: Reverse
Name: kduD [H]
Synonym: mll4054
Alternate gene names: 13473452
Gene position: 3241784-3241008 (Counterclockwise)
Preceding gene: 13473453
Following gene: 13473451
Centisome position: 46.07
GC content: 66.54
Gene sequence:
>777_bases ATGAACAGCACCGGCATCGATCTCTCCGCCTTCAGCCTGGCCGGCAAGCGCATTCTGGTCACCGGCGCCAACACCGGCAT CGGACAAGGCATTGTCCTCTCGATCGCGCGCGCCGGCGGTGTGGTGATCGGCGTCGGCCGTTCGTCGATGGACGAGACGG CGAGCAAGGTCGCGGCCATCGGTGCCAGGTTCGAGACGGTGAGCGCCGACCTTGCCGACACGGCGACCGCCGGTCCTATG CTCGATCGGGTCTGGGACGAAAGCGGGCCGCTCGACGGGTTGGTCAACAATGCCGGTATCATCCGACGCGCCGATGCGGT CGATCTGACCGAGACCGACTGGGACGATGTCATGGACGTCAATTTGAAGACGGTCTTTCTGCTTTGCCAGTCCTTCGCCA GGCGCGCCCTTGCCGACGGTCGCCGGGGCAAGATCGTCAACATCGCCTCGGTGCTGAGTTTCCAGGGCGGCATCCGCGTC GCCTCCTACACCGCCTCGAAACATGGCGTGCTCGGGATCACCCGGCTGCTCGCCTGCGAATGGGCGGCCAAGGGCATCAA CGTCAACGCCATCGCGCCGGGCTATGTCGAGACCAACAACACGCAGGCGCTGCGTGCCGACCCTGACCGCAGCGCCGCCA TTCTCGGCCGCATTCCGGCGGGGCGGTGGGGCGAGCCTTCCGATATTGGCGATGCCGCCGTCTTCCTTCTGGCCCGGGCT TCCGACTATATGCATGGCGCGGCGGTGCCGGTGGATGGCGGCTGGCTGGCGCGATGA
Upstream 100 bases:
>100_bases GGAATTGGCCCATACGCTGGCGAAAAAGGCGTACCGGCTTTGATGGCGGCGGCTCAAGATCCCAACGGCGGCGGCTGTTG GATCAGCATGACAGGCTGAC
Downstream 100 bases:
>100_bases GGGGGACGACGATGACGAAGCCCAAGATCTTCGCGCATGCCGGCGAGGGGGCGTGGACGCCGACGCCGGATGGCAACAGG CGGCGCGTTCTCCTCTCCAC
Product: 2-deoxy-D-gluconate 3-dehydrogenase
Products: NA
Alternate protein names: 2-keto-3-deoxygluconate 5-dehydrogenase; 2-keto-3-deoxygluconate oxidoreductase; KDG oxidoreductase [H]
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MNSTGIDLSAFSLAGKRILVTGANTGIGQGIVLSIARAGGVVIGVGRSSMDETASKVAAIGARFETVSADLADTATAGPM LDRVWDESGPLDGLVNNAGIIRRADAVDLTETDWDDVMDVNLKTVFLLCQSFARRALADGRRGKIVNIASVLSFQGGIRV ASYTASKHGVLGITRLLACEWAAKGINVNAIAPGYVETNNTQALRADPDRSAAILGRIPAGRWGEPSDIGDAAVFLLARA SDYMHGAAVPVDGGWLAR
Sequences:
>Translated_258_residues MNSTGIDLSAFSLAGKRILVTGANTGIGQGIVLSIARAGGVVIGVGRSSMDETASKVAAIGARFETVSADLADTATAGPM LDRVWDESGPLDGLVNNAGIIRRADAVDLTETDWDDVMDVNLKTVFLLCQSFARRALADGRRGKIVNIASVLSFQGGIRV ASYTASKHGVLGITRLLACEWAAKGINVNAIAPGYVETNNTQALRADPDRSAAILGRIPAGRWGEPSDIGDAAVFLLARA SDYMHGAAVPVDGGWLAR >Mature_258_residues MNSTGIDLSAFSLAGKRILVTGANTGIGQGIVLSIARAGGVVIGVGRSSMDETASKVAAIGARFETVSADLADTATAGPM LDRVWDESGPLDGLVNNAGIIRRADAVDLTETDWDDVMDVNLKTVFLLCQSFARRALADGRRGKIVNIASVLSFQGGIRV ASYTASKHGVLGITRLLACEWAAKGINVNAIAPGYVETNNTQALRADPDRSAAILGRIPAGRWGEPSDIGDAAVFLLARA SDYMHGAAVPVDGGWLAR
Specific function: Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3- deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=34.9593495934959, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=7e-29, Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=31.4516129032258, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=31.7796610169492, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=26.953125, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=27.710843373494, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI33667109, Length=208, Percent_Identity=28.8461538461538, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=26.0204081632653, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=28.6852589641434, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=27.0042194092827, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=26.0416666666667, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI126723750, Length=148, Percent_Identity=30.4054054054054, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4503301, Length=208, Percent_Identity=22.5961538461538, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI59889578, Length=175, Percent_Identity=30.8571428571429, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4758504, Length=180, Percent_Identity=32.7777777777778, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=30.0970873786408, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=58.1673306772908, Blast_Score=290, Evalue=7e-80, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=35.9073359073359, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=37.9446640316205, Blast_Score=156, Evalue=1e-39, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=36.5853658536585, Blast_Score=147, Evalue=6e-37, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=33.7254901960784, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=31.9672131147541, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=31.6872427983539, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=29.5275590551181, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=29.0983606557377, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=27.9352226720648, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787526, Length=220, Percent_Identity=30, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789057, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=27.8225806451613, Blast_Score=69, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=34.1463414634146, Blast_Score=133, Evalue=1e-31, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=32.6530612244898, Blast_Score=125, Evalue=3e-29, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=30.6122448979592, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.8387096774194, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.8804780876494, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=28.9795918367347, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=30.1526717557252, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=29.5019157088123, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=31.4176245210728, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=28.3524904214559, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.2238805970149, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=29.6153846153846, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.3893129770992, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=28.2442748091603, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=30.9433962264151, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=28.6259541984733, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=28.7878787878788, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=28.4584980237154, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=27.8625954198473, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=27.4809160305344, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=26.5873015873016, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=30.0380228136882, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=29.3650793650794, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=30.8, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=25.6, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=28.957528957529, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17565030, Length=255, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=27.6041666666667, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203115, Length=188, Percent_Identity=28.1914893617021, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=28.0632411067194, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71997099, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=27.8947368421053, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=29.2929292929293, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=34.5381526104418, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=36.4754098360656, Blast_Score=124, Evalue=5e-29, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=32.6693227091633, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=32.0158102766798, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=33.0739299610895, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=32.0158102766798, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=27.3092369477912, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=29.7619047619048, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=30.9941520467836, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=28.7179487179487, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=32.3232323232323, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=28.804347826087, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24648693, Length=241, Percent_Identity=28.6307053941909, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355889, Length=241, Percent_Identity=28.6307053941909, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=29.4736842105263, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011286 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.127 [H]
Molecular weight: Translated: 26821; Mature: 26821
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSTGIDLSAFSLAGKRILVTGANTGIGQGIVLSIARAGGVVIGVGRSSMDETASKVAAI CCCCCCCEEHEEECCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHH GARFETVSADLADTATAGPMLDRVWDESGPLDGLVNNAGIIRRADAVDLTETDWDDVMDV HHHHHECCCCHHHHCCCCHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCCCCCCHHHHHC NLKTVFLLCQSFARRALADGRRGKIVNIASVLSFQGGIRVASYTASKHGVLGITRLLACE HHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH WAAKGINVNAIAPGYVETNNTQALRADPDRSAAILGRIPAGRWGEPSDIGDAAVFLLARA HHHCCCCEEEECCCEEECCCCEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH SDYMHGAAVPVDGGWLAR HHCCCCCCEEECCCCCCC >Mature Secondary Structure MNSTGIDLSAFSLAGKRILVTGANTGIGQGIVLSIARAGGVVIGVGRSSMDETASKVAAI CCCCCCCEEHEEECCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHH GARFETVSADLADTATAGPMLDRVWDESGPLDGLVNNAGIIRRADAVDLTETDWDDVMDV HHHHHECCCCHHHHCCCCHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCCCCCCHHHHHC NLKTVFLLCQSFARRALADGRRGKIVNIASVLSFQGGIRVASYTASKHGVLGITRLLACE HHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH WAAKGINVNAIAPGYVETNNTQALRADPDRSAAILGRIPAGRWGEPSDIGDAAVFLLARA HHHCCCCEEEECCCEEECCCCEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH SDYMHGAAVPVDGGWLAR HHCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1766386 [H]