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The map label for this gene is asnC [C]

Identifier: 13473348

GI number: 13473348

Start: 3139318

End: 3139776

Strand: Reverse

Name: asnC [C]

Synonym: mll3910

Alternate gene names: 13473348

Gene position: 3139776-3139318 (Counterclockwise)

Preceding gene: 13473352

Following gene: 13473347

Centisome position: 44.62

GC content: 64.27

Gene sequence:

>459_bases
ATGCTTGACGATCTCGACCGAAACCTCCTCGAAATCCTGGTCAGGGATGCACGGACCTCGCTGAAGGAGCTGGCTGCCCA
GGTCGGGCTGTCGTCGCCGAGCGTTTCGGAGCGGCTGCGACGGCTCGAGGAGCGCGGCGTCATCCGGGCGTTCACAGTCG
AGATCGACCCGCTGGCGCTCGGCTATACGCTGCAGGCGATCGTGCGCATCCGGCCTTTGCCGGGCAAGCTGCACATCGTC
CAGAAACTGATCGAGGAGATCGCCGAGTTCGGTGAATGTGACAAGGTGACGGGTGACGACTGTTTCGTCGCCCGGCTGTT
CGTGCGTTCGATCGGTGACCTCGACGGCATTCTCGATCGCATCGCCGACAAGGCCGAGACCAGCACCGCCATCATCAAGG
CGCAGCCGATCCGGCGGCGGCCGCCGCCGCTCGTGGCGCCATCTTCATCTTCGTCTTGA

Upstream 100 bases:

>100_bases
TCTCATGCGAGATGGTCGCTTTCCATCTCATTGGAAAGGCTGTATGGAGATATGACCTAATTATATTAGGTGCTTTCCGC
AAATCTGTGAGAAATCTGAA

Downstream 100 bases:

>100_bases
TCCCGCATGGCCGTGGTGGACAGGCGCGACCGGTCCACTAGATGTCAGCCCGCCAGATGATGGGCTGTGAGACGAGGAAG
ACATGGCGCAGAATATCTAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLDDLDRNLLEILVRDARTSLKELAAQVGLSSPSVSERLRRLEERGVIRAFTVEIDPLALGYTLQAIVRIRPLPGKLHIV
QKLIEEIAEFGECDKVTGDDCFVARLFVRSIGDLDGILDRIADKAETSTAIIKAQPIRRRPPPLVAPSSSSS

Sequences:

>Translated_152_residues
MLDDLDRNLLEILVRDARTSLKELAAQVGLSSPSVSERLRRLEERGVIRAFTVEIDPLALGYTLQAIVRIRPLPGKLHIV
QKLIEEIAEFGECDKVTGDDCFVARLFVRSIGDLDGILDRIADKAETSTAIIKAQPIRRRPPPLVAPSSSSS
>Mature_152_residues
MLDDLDRNLLEILVRDARTSLKELAAQVGLSSPSVSERLRRLEERGVIRAFTVEIDPLALGYTLQAIVRIRPLPGKLHIV
QKLIEEIAEFGECDKVTGDDCFVARLFVRSIGDLDGILDRIADKAETSTAIIKAQPIRRRPPPLVAPSSSSS

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=152, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1787116, Length=101, Percent_Identity=37.6237623762376, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16785; Mature: 16785

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDLDRNLLEILVRDARTSLKELAAQVGLSSPSVSERLRRLEERGVIRAFTVEIDPLAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECCHHH
GYTLQAIVRIRPLPGKLHIVQKLIEEIAEFGECDKVTGDDCFVARLFVRSIGDLDGILDR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IADKAETSTAIIKAQPIRRRPPPLVAPSSSSS
HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLDDLDRNLLEILVRDARTSLKELAAQVGLSSPSVSERLRRLEERGVIRAFTVEIDPLAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECCHHH
GYTLQAIVRIRPLPGKLHIVQKLIEEIAEFGECDKVTGDDCFVARLFVRSIGDLDGILDR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IADKAETSTAIIKAQPIRRRPPPLVAPSSSSS
HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA