BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is bdhA [H]

Identifier: 13473134

GI number: 13473134

Start: 2930319

End: 2931107

Strand: Reverse

Name: bdhA [H]

Synonym: mll3632

Alternate gene names: 13473134

Gene position: 2931107-2930319 (Counterclockwise)

Preceding gene: 13473138

Following gene: 13473133

Centisome position: 41.66

GC content: 64.13

Gene sequence:

>789_bases
ATGGGTTCCCTGTCTTCGAAGAATGCCCTCGTCACCGGCTCGACCAGTGGTATCGGCCTGGCCATCGCCCGCGCCTTCGC
CGCCGAGGGCGCCAATGTCACCATCAACGGTCTCGGCGATCCGGCGGCCATCGAGCAGGAGCGCGCGGGCATCGAGAAGG
ATTTCGGCGTCAAGTGCCGCTACTCCGACGCCAACATGATGGATGGCGCCGCGGTCAGCGCCATGGTGCATGACGCCGAG
GCTGCATTCGGCAGCCTCGACATCCTGGTCAACAATGCCGGCATCCAGCATGTCGCGCCGATCGAGGAGTTTCCCGACGA
CAAATGGGAAGCCATCATCCGCATCAATCTTCTGGCGGCCTTCTATGCCATCAAGGCGGCGGTGCCTGGGATGAAGGCGC
GCAAATGGGGCCGCATCATCAACACGGCCTCGGCCCACGCGCTGGTCGCCTCGCCGTTCAAGTCGGCCTACGTCTCGGCC
AAGCACGGCATTGCAGGGTTGACCAAGACGGTGGCGCTGGAAGTGGCGCAGGACGGCATCACCGTCAACGCTATCGCGCC
CGGCTATGTCTGGACGCCGCTGGTCGAGAAACAGATCCCCGACACGATGAAGGCGCGCGGCATGACCGAGGAACAGGTCA
AGCATGACGTGCTGCTCGCCGCACAGCCGACGAAGGAATTCGTCACCGTGGAGGAACTTGCGGCGTTGACACTGTTCCTG
TGCTCAGATGCGGCCAGGCAGATCACCGGCACGACCTTGCCGATGGACGGCGGCTGGACGGCGCAGTAG

Upstream 100 bases:

>100_bases
TCGTCTGGCTGTAATCGCATCGACACATGGCTCTGTCATTGTCATGTTGCGACGCACAATTATATCCTCTCATTCCCCTC
CCACCTCTCGCGAGATCACC

Downstream 100 bases:

>100_bases
AGGGTCAGTCAAGGCGTTGCGTTTCTGGCTGGCGCCACGCGGCGCCAGCGGGAAGGGTGCGGTCAAGGTCCATGAAAATC
ATCCAGCTCTCCGATCCGCA

Product: D-beta-hydroxybutyrate dehydrogenase

Products: NA

Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MGSLSSKNALVTGSTSGIGLAIARAFAAEGANVTINGLGDPAAIEQERAGIEKDFGVKCRYSDANMMDGAAVSAMVHDAE
AAFGSLDILVNNAGIQHVAPIEEFPDDKWEAIIRINLLAAFYAIKAAVPGMKARKWGRIINTASAHALVASPFKSAYVSA
KHGIAGLTKTVALEVAQDGITVNAIAPGYVWTPLVEKQIPDTMKARGMTEEQVKHDVLLAAQPTKEFVTVEELAALTLFL
CSDAARQITGTTLPMDGGWTAQ

Sequences:

>Translated_262_residues
MGSLSSKNALVTGSTSGIGLAIARAFAAEGANVTINGLGDPAAIEQERAGIEKDFGVKCRYSDANMMDGAAVSAMVHDAE
AAFGSLDILVNNAGIQHVAPIEEFPDDKWEAIIRINLLAAFYAIKAAVPGMKARKWGRIINTASAHALVASPFKSAYVSA
KHGIAGLTKTVALEVAQDGITVNAIAPGYVWTPLVEKQIPDTMKARGMTEEQVKHDVLLAAQPTKEFVTVEELAALTLFL
CSDAARQITGTTLPMDGGWTAQ
>Mature_261_residues
GSLSSKNALVTGSTSGIGLAIARAFAAEGANVTINGLGDPAAIEQERAGIEKDFGVKCRYSDANMMDGAAVSAMVHDAEA
AFGSLDILVNNAGIQHVAPIEEFPDDKWEAIIRINLLAAFYAIKAAVPGMKARKWGRIINTASAHALVASPFKSAYVSAK
HGIAGLTKTVALEVAQDGITVNAIAPGYVWTPLVEKQIPDTMKARGMTEEQVKHDVLLAAQPTKEFVTVEELAALTLFLC
SDAARQITGTTLPMDGGWTAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=261, Percent_Identity=33.7164750957854, Blast_Score=118, Evalue=4e-27,
Organism=Homo sapiens, GI32483357, Length=260, Percent_Identity=32.6923076923077, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI4504505, Length=269, Percent_Identity=30.1115241635688, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI20149619, Length=251, Percent_Identity=29.4820717131474, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI15277342, Length=270, Percent_Identity=28.8888888888889, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI7705925, Length=261, Percent_Identity=31.0344827586207, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=31.3725490196078, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI59889578, Length=239, Percent_Identity=30.9623430962343, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4503301, Length=203, Percent_Identity=29.5566502463054, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=28.957528957529, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=28.1746031746032, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI142976729, Length=214, Percent_Identity=27.5700934579439, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=29.6482412060301, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI5031737, Length=261, Percent_Identity=28.735632183908, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=26.7015706806283, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=32.620320855615, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=31.6326530612245, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI223718074, Length=204, Percent_Identity=26.4705882352941, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=25.8823529411765, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI224922801, Length=177, Percent_Identity=29.3785310734463, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI226371731, Length=192, Percent_Identity=27.6041666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40254986, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=23.1958762886598, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=37.8787878787879, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=34.6303501945525, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790717, Length=258, Percent_Identity=31.0077519379845, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87082160, Length=260, Percent_Identity=33.0769230769231, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=34.1176470588235, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=30.6513409961686, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=32.1705426356589, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=28.6274509803922, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=29.1187739463602, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=30.5882352941176, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787905, Length=260, Percent_Identity=28.4615384615385, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI2367365, Length=262, Percent_Identity=27.8625954198473, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=26.7015706806283, Blast_Score=68, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=31.5175097276265, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=261, Percent_Identity=29.1187739463602, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=29.3893129770992, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=288, Percent_Identity=29.5138888888889, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=277, Percent_Identity=31.4079422382672, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=282, Percent_Identity=28.7234042553192, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=264, Percent_Identity=30.6818181818182, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=284, Percent_Identity=31.6901408450704, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=287, Percent_Identity=29.616724738676, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=286, Percent_Identity=29.3706293706294, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=26.4367816091954, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=211, Percent_Identity=33.6492890995261, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=279, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=282, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=278, Percent_Identity=28.4172661870504, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=285, Percent_Identity=29.8245614035088, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=264, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=262, Percent_Identity=27.0992366412214, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=27.979274611399, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=27.6150627615063, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=32.6829268292683, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=29.9019607843137, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=28.957528957529, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=214, Percent_Identity=32.7102803738318, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=29.136690647482, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=28.4132841328413, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=211, Percent_Identity=32.2274881516588, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=259, Percent_Identity=26.6409266409266, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=25.7575757575758, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=204, Percent_Identity=28.921568627451, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=260, Percent_Identity=27.6923076923077, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=260, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=242, Percent_Identity=28.9256198347107, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=22.9591836734694, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=28.4615384615385, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=26.6423357664234, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=244, Percent_Identity=31.1475409836066, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.7441860465116, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=214, Percent_Identity=25.7009345794392, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=216, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355319, Length=267, Percent_Identity=30.3370786516854, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI23397609, Length=260, Percent_Identity=31.5384615384615, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=30.9160305343511, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI28571526, Length=267, Percent_Identity=31.8352059925094, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI18859837, Length=209, Percent_Identity=33.4928229665072, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21357041, Length=264, Percent_Identity=29.5454545454545, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24639444, Length=263, Percent_Identity=29.6577946768061, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=26.4591439688716, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17737361, Length=203, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24644337, Length=178, Percent_Identity=33.1460674157303, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=233, Percent_Identity=25.7510729613734, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=28.1914893617021, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=28.1914893617021, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=27.1794871794872, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584748, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076933, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007236, Length=237, Percent_Identity=26.5822784810127, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=192, Percent_Identity=26.0416666666667, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21356301, Length=203, Percent_Identity=26.1083743842365, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=27.8350515463918, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571387, Length=216, Percent_Identity=26.8518518518519, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.30 [H]

Molecular weight: Translated: 27523; Mature: 27392

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLSSKNALVTGSTSGIGLAIARAFAAEGANVTINGLGDPAAIEQERAGIEKDFGVKCR
CCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEE
YSDANMMDGAAVSAMVHDAEAAFGSLDILVNNAGIQHVAPIEEFPDDKWEAIIRINLLAA
ECCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHH
FYAIKAAVPGMKARKWGRIINTASAHALVASPFKSAYVSAKHGIAGLTKTVALEVAQDGI
HHHHHHHCCCHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHCCHHHHHHHHEEEECCCCE
TVNAIAPGYVWTPLVEKQIPDTMKARGMTEEQVKHDVLLAAQPTKEFVTVEELAALTLFL
EEEEECCCCEECHHHHHHCCHHHHHCCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHH
CSDAARQITGTTLPMDGGWTAQ
HHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GSLSSKNALVTGSTSGIGLAIARAFAAEGANVTINGLGDPAAIEQERAGIEKDFGVKCR
CCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEE
YSDANMMDGAAVSAMVHDAEAAFGSLDILVNNAGIQHVAPIEEFPDDKWEAIIRINLLAA
ECCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHH
FYAIKAAVPGMKARKWGRIINTASAHALVASPFKSAYVSAKHGIAGLTKTVALEVAQDGI
HHHHHHHCCCHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHCCHHHHHHHHEEEECCCCE
TVNAIAPGYVWTPLVEKQIPDTMKARGMTEEQVKHDVLLAAQPTKEFVTVEELAALTLFL
EEEEECCCCEECHHHHHHCCHHHHHCCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHH
CSDAARQITGTTLPMDGGWTAQ
HHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9922248; 11481431 [H]