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The map label for this gene is deoR [H]

Identifier: 13473112

GI number: 13473112

Start: 2908440

End: 2909345

Strand: Reverse

Name: deoR [H]

Synonym: mll3605

Alternate gene names: 13473112

Gene position: 2909345-2908440 (Counterclockwise)

Preceding gene: 13473115

Following gene: 13473108

Centisome position: 41.35

GC content: 65.89

Gene sequence:

>906_bases
ATGTATTTCGTCGAGCAGATGACGCAGAACGAGATCGCCGACGTGCTTGGCGTCGGCCGCGTCACCATCGTGCGCATGCT
GGCCGAGGCGCGTTCGCGCAACGAGGTGAAGATCACCATCGAGAGCGAATTGTCGGAGATCGTGCGGCTGGAGCGCGCCC
TGGAGCGGACGTTCGGCCTGCAGCAGGCGCTGGTCGCCCCGCTCACCGCACCCAATGCCGATCCGATCCCGGCGATCAGC
GCCAAGACCGGCGCTTTCCTGTCCGACACGATGAAATCCGGCATGCGCGTCGGCGTCGGCTGGGGCCGGACGCTGTTCTC
CAGCCTGCCCTTCATCAGCGCCAAGTCGCTCTCAGACTTCAAGGTCATCTCGCTGCTCGGCGGTGTCGGCGTCGTGCGGC
GCTACAACCCGGCCGAGTTCGCCTGGCGGTTCGCGCAGATATTCCAGGGCGACGGCTATCTGATCCCGACGCCGGCCGTC
GTCGACAGCGTCGAGACGAAGATCGCACTGGTCGAGCGCTGCGGCCTGCAGGAGGTTTTCGAGATGGCCAACGTGCTCGA
TGCGGTTCTGCTGAGCGTCGGCGGCATCGCCTCGGCCACCACCTTCTCCCGCGGCGGCTTTCTCAGGGAAGCAGACCGCG
AGGCCCTGCTCGAGCGTGGCGCCGTCGGCGACCTTCTGTTCCATTTCTTCGACCGAAATGGCGATCTGGTCGACCATCCC
GTCAACAGCCATGTGATGTCGGTGGAAGTCGACCGCCTGCGCGCGGCGCCGATCCGCATCCTCACCTCCGGCGGCGAGGA
GAAGACCGAGGCGCTGCTCGGCGCCATGAACCTGATCGCGCCGACGATCCTGATCACCGACGAGGAAAGCGCCAAGCGCA
TGCTCGAAGCGGTCAGCGAAGGCTGA

Upstream 100 bases:

>100_bases
CGAAGAGGGGCGGGCCGAAGAGAGGCGGGCAGGAGCCGAGGCGACCGAGCAGGTCGCCAGTGAAAGCCGGACGGACCGCC
TCAGGATTCGCGCCGCCTGG

Downstream 100 bases:

>100_bases
AGGACCCCGTGACATAGTCGGGCCAGGCCTGCTGCTCGTCGAAAACGGCGGCAAGATCCGGTGTGTCCGCCAATATGCCG
CCGAGCACCAGCGCCGTGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MYFVEQMTQNEIADVLGVGRVTIVRMLAEARSRNEVKITIESELSEIVRLERALERTFGLQQALVAPLTAPNADPIPAIS
AKTGAFLSDTMKSGMRVGVGWGRTLFSSLPFISAKSLSDFKVISLLGGVGVVRRYNPAEFAWRFAQIFQGDGYLIPTPAV
VDSVETKIALVERCGLQEVFEMANVLDAVLLSVGGIASATTFSRGGFLREADREALLERGAVGDLLFHFFDRNGDLVDHP
VNSHVMSVEVDRLRAAPIRILTSGGEEKTEALLGAMNLIAPTILITDEESAKRMLEAVSEG

Sequences:

>Translated_301_residues
MYFVEQMTQNEIADVLGVGRVTIVRMLAEARSRNEVKITIESELSEIVRLERALERTFGLQQALVAPLTAPNADPIPAIS
AKTGAFLSDTMKSGMRVGVGWGRTLFSSLPFISAKSLSDFKVISLLGGVGVVRRYNPAEFAWRFAQIFQGDGYLIPTPAV
VDSVETKIALVERCGLQEVFEMANVLDAVLLSVGGIASATTFSRGGFLREADREALLERGAVGDLLFHFFDRNGDLVDHP
VNSHVMSVEVDRLRAAPIRILTSGGEEKTEALLGAMNLIAPTILITDEESAKRMLEAVSEG
>Mature_301_residues
MYFVEQMTQNEIADVLGVGRVTIVRMLAEARSRNEVKITIESELSEIVRLERALERTFGLQQALVAPLTAPNADPIPAIS
AKTGAFLSDTMKSGMRVGVGWGRTLFSSLPFISAKSLSDFKVISLLGGVGVVRRYNPAEFAWRFAQIFQGDGYLIPTPAV
VDSVETKIALVERCGLQEVFEMANVLDAVLLSVGGIASATTFSRGGFLREADREALLERGAVGDLLFHFFDRNGDLVDHP
VNSHVMSVEVDRLRAAPIRILTSGGEEKTEALLGAMNLIAPTILITDEESAKRMLEAVSEG

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=25.3289473684211, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082414, Length=301, Percent_Identity=26.2458471760797, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 32684; Mature: 32684

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFVEQMTQNEIADVLGVGRVTIVRMLAEARSRNEVKITIESELSEIVRLERALERTFGL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
QQALVAPLTAPNADPIPAISAKTGAFLSDTMKSGMRVGVGWGRTLFSSLPFISAKSLSDF
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCHHHHHHHHCCCCCCCCCCHH
KVISLLGGVGVVRRYNPAEFAWRFAQIFQGDGYLIPTPAVVDSVETKIALVERCGLQEVF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCHHHHH
EMANVLDAVLLSVGGIASATTFSRGGFLREADREALLERGAVGDLLFHFFDRNGDLVDHP
HHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCC
VNSHVMSVEVDRLRAAPIRILTSGGEEKTEALLGAMNLIAPTILITDEESAKRMLEAVSE
CCCCEEEEEHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHC
G
C
>Mature Secondary Structure
MYFVEQMTQNEIADVLGVGRVTIVRMLAEARSRNEVKITIESELSEIVRLERALERTFGL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
QQALVAPLTAPNADPIPAISAKTGAFLSDTMKSGMRVGVGWGRTLFSSLPFISAKSLSDF
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCHHHHHHHHCCCCCCCCCCHH
KVISLLGGVGVVRRYNPAEFAWRFAQIFQGDGYLIPTPAVVDSVETKIALVERCGLQEVF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCHHHHH
EMANVLDAVLLSVGGIASATTFSRGGFLREADREALLERGAVGDLLFHFFDRNGDLVDHP
HHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCC
VNSHVMSVEVDRLRAAPIRILTSGGEEKTEALLGAMNLIAPTILITDEESAKRMLEAVSE
CCCCEEEEEHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]