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The map label for this gene is rbsC [H]

Identifier: 13473105

GI number: 13473105

Start: 2900402

End: 2901394

Strand: Reverse

Name: rbsC [H]

Synonym: mll3597

Alternate gene names: 13473105

Gene position: 2901394-2900402 (Counterclockwise)

Preceding gene: 13473106

Following gene: 13473104

Centisome position: 41.24

GC content: 67.17

Gene sequence:

>993_bases
ATGACCGACAGAACGACGACGAGCGTGGATCAGGCGGCGGTCAGGAGCCGGCGGCTGCGCACAGCCTTCGCGGCGCTCGG
CATGCTGCCGGTGCTGGTGCTGCTGGCGGCGGGCTTCCAGTTCATCAATCCGCGCTTCCTCACCGAAACCAATCTGCTCA
TCGTCACGCAGCAATCGTCGATCAACATCGTGCTCGCCGCCGGCATGACCTTCGTCATCCTGACCGGCGGCATCGACCTG
TCGGTCGGCTCCATCCTCGCCGCGTCGGCGATGGTGGCGGTGCTGGTGTCACTGGTGCCCGACTGGGGCCTGCTCGGCGT
GCCGGCGGCCATCCTCGTCGGCCTCGGCTTCGGGCTCGTGAACGGGCTGCTCGTCGCCTATATCAGGCTGCCACCCTTCA
TCGTCACGCTGGGTTCGCTGACGGCCGTGCGCGGCGTTGCCCGCCTGCTCGGGCAGGACACGACGGTGTTCAATTCGGAC
CTGCCGTTCGACTTCATCGGCAATGGCTCGCTGTTCGGCATTCCCTGGCTGGTCGTCATCGCGCTGTCGGTGGTCGTGCT
GTCCTGGCTGGTGCTCAAGCGCACCGTGCTCGGCGCCTGGATCTATGCGGTCGGCGGCAATGCCGAGGCGGCGCGGCTGA
CCGGCATCAAGGTGCCGCTGGTGCTGCTCTTCGTCTATGGCGTGTCCGGCCTGCTCGCCGGCCTCGGCGGCGCCATGTCG
GCGGCAAGGCTTTACGCCGCCAACGGCCTGCAGCTTGGCCAGTCCTACGAGCTCGACGCCATCGCCGCCGTCATCCTCGG
CGGCACCAGTTTCGTCGGCGGCGTCGGCTCGATCTGGGGCACGCTGATCGGCGGCCTGATCATCGCGGTTCTGTCCAACG
GGCTCATCTTGGCCGGTGTCTCGGACATCTGGCAGTACATCATCAAGGGATTGGTCATCATCGTGGCGGTCGCCCTCGAC
CGCTACCGGCTCCAGGCAGGGGCGAGAACGTGA

Upstream 100 bases:

>100_bases
TGATGCGCGACGGCGCCATAGCAGGCGAGGTGACGGCATCCGGAGGCGAGCCGCTGCGTCAGGAGGCGATCATGGAACTT
GCGACGGGAGCGGCCCAGGA

Downstream 100 bases:

>100_bases
GTGACCTAGTCGCCGGCATCAAAGACCGGCTTGTGTAACGCACCGTGAGAGGCGCGGGGCATCAGGAGGAAGTAAGCGTA
ATGAAGACCATCGCCAAACT

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTDRTTTSVDQAAVRSRRLRTAFAALGMLPVLVLLAAGFQFINPRFLTETNLLIVTQQSSINIVLAAGMTFVILTGGIDL
SVGSILAASAMVAVLVSLVPDWGLLGVPAAILVGLGFGLVNGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSD
LPFDFIGNGSLFGIPWLVVIALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYGVSGLLAGLGGAMS
AARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLIIAVLSNGLILAGVSDIWQYIIKGLVIIVAVALD
RYRLQAGART

Sequences:

>Translated_330_residues
MTDRTTTSVDQAAVRSRRLRTAFAALGMLPVLVLLAAGFQFINPRFLTETNLLIVTQQSSINIVLAAGMTFVILTGGIDL
SVGSILAASAMVAVLVSLVPDWGLLGVPAAILVGLGFGLVNGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSD
LPFDFIGNGSLFGIPWLVVIALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYGVSGLLAGLGGAMS
AARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLIIAVLSNGLILAGVSDIWQYIIKGLVIIVAVALD
RYRLQAGART
>Mature_329_residues
TDRTTTSVDQAAVRSRRLRTAFAALGMLPVLVLLAAGFQFINPRFLTETNLLIVTQQSSINIVLAAGMTFVILTGGIDLS
VGSILAASAMVAVLVSLVPDWGLLGVPAAILVGLGFGLVNGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSDL
PFDFIGNGSLFGIPWLVVIALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYGVSGLLAGLGGAMSA
ARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLIIAVLSNGLILAGVSDIWQYIIKGLVIIVAVALDR
YRLQAGART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=297, Percent_Identity=44.7811447811448, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=40.0621118012422, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=36.8263473053892, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788896, Length=319, Percent_Identity=33.8557993730408, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87082395, Length=270, Percent_Identity=37.037037037037, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=38.4297520661157, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=31.5972222222222, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787794, Length=326, Percent_Identity=31.2883435582822, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34185; Mature: 34054

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRTTTSVDQAAVRSRRLRTAFAALGMLPVLVLLAAGFQFINPRFLTETNLLIVTQQSS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCEEEEEECCC
INIVLAAGMTFVILTGGIDLSVGSILAASAMVAVLVSLVPDWGLLGVPAAILVGLGFGLV
CCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSDLPFDFIGNGSLFGIPWLVVI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCHHHHHHHHH
ALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYGVSGLLAGLGGAMS
HHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLIIAVLSNGLILAGV
HHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECH
SDIWQYIIKGLVIIVAVALDRYRLQAGART
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDRTTTSVDQAAVRSRRLRTAFAALGMLPVLVLLAAGFQFINPRFLTETNLLIVTQQSS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCEEEEEECCC
INIVLAAGMTFVILTGGIDLSVGSILAASAMVAVLVSLVPDWGLLGVPAAILVGLGFGLV
CCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSDLPFDFIGNGSLFGIPWLVVI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCHHHHHHHHH
ALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYGVSGLLAGLGGAMS
HHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLIIAVLSNGLILAGV
HHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECH
SDIWQYIIKGLVIIVAVALDRYRLQAGART
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]