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The map label for this gene is rbsB [H]

Identifier: 13473104

GI number: 13473104

Start: 2899383

End: 2900357

Strand: Reverse

Name: rbsB [H]

Synonym: mll3596

Alternate gene names: 13473104

Gene position: 2900357-2899383 (Counterclockwise)

Preceding gene: 13473105

Following gene: 13473103

Centisome position: 41.22

GC content: 63.79

Gene sequence:

>975_bases
GTGAGAGGCGCGGGGCATCAGGAGGAAGTAAGCGTAATGAAGACCATCGCCAAACTGCTCTGCGGCGCCGCGTTCGCGGC
CGTCGCCATCGCGCCGGCATCGGCCAAGGACCTCAACAAGGTCGGCATCTCGGTCGGCCTGCTCGGCAACCCCTTCTTCG
TAGCCACCATCAAGGGCATCGAGGACGCGGCCAAGAAGATCAATCCGAAGGTCGAGGTGACGTCGGTGTCGGCCGACTAC
GATCTCAACAAGCAGGTCTCGCAGGTCGATTCCTTCATCGCCGCGGGTGTCGACGTGATCATGCTCAACGCGGTCGACGC
CAAGGCGATCGCGCCGGCGGTGAAGAAGGCACAGGCTGCCGGCATCATCGTTGCCGCCTTCGACGTCTCGGCGCCGGGCG
CCGATGTCACCGTGATGACCAACAACGTCAAGGCCGGCGAGGAGGCCTGCCAGTATCTGGTCGATCACACCGGCGGCAAG
GGCGACTACGTCATCCTCAACGGCCCGGCATCATCGTCGATCCTGGAGCGGGTCAAGGGCTGCAAGAACGTGCTTTCGCA
GCATGCCGACATCAAGATCCTGTCCGACGACCAGAACGCCGAAGGTTCGCGTGACGGTGGCCTGAAAGTGTTCCAGTCGC
TGCTCACCCGCTTCGACAAGATCGACGCGGTGTTCGCCATCAACGATCCGACGGCGATCGGCGCCCAGCTCGCCGCCAAG
CAGCTCAACCGCTCCGAGTTCATCTTCACCGCGGTCGATGGCGCGCCCGATATCGAAAAGGAGCTTTCTTCCGGCTCCTC
GATGATCAAGGCCTCGGCCTCGCAGGATCCCTATGTGATGGCCGGCCAGTCGCTGACGATGGCGGCGGAGCTGCTCGCCG
GCAAGAAGCCGGCTGAGGCCACCGTGCTGCTCGATCCGAAGCTGATCACCGCCGAGAACCTGAAGGACTACAAGGGCTGG
ACCGCGGCCCGCTGA

Upstream 100 bases:

>100_bases
TCATCGTGGCGGTCGCCCTCGACCGCTACCGGCTCCAGGCAGGGGCGAGAACGTGAGTGACCTAGTCGCCGGCATCAAAG
ACCGGCTTGTGTAACGCACC

Downstream 100 bases:

>100_bases
TCACTCCAACAAGCGCGGCCGGATTTGTCCGGCCGCGTCTTTCTTCATCGCCGCAAACCGGAGACGATCATGGCGCGCAT
CGGAATCCATTCTTTTGTCT

Product: ribose ABC transporter (ribose-binding protein)

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MRGAGHQEEVSVMKTIAKLLCGAAFAAVAIAPASAKDLNKVGISVGLLGNPFFVATIKGIEDAAKKINPKVEVTSVSADY
DLNKQVSQVDSFIAAGVDVIMLNAVDAKAIAPAVKKAQAAGIIVAAFDVSAPGADVTVMTNNVKAGEEACQYLVDHTGGK
GDYVILNGPASSSILERVKGCKNVLSQHADIKILSDDQNAEGSRDGGLKVFQSLLTRFDKIDAVFAINDPTAIGAQLAAK
QLNRSEFIFTAVDGAPDIEKELSSGSSMIKASASQDPYVMAGQSLTMAAELLAGKKPAEATVLLDPKLITAENLKDYKGW
TAAR

Sequences:

>Translated_324_residues
MRGAGHQEEVSVMKTIAKLLCGAAFAAVAIAPASAKDLNKVGISVGLLGNPFFVATIKGIEDAAKKINPKVEVTSVSADY
DLNKQVSQVDSFIAAGVDVIMLNAVDAKAIAPAVKKAQAAGIIVAAFDVSAPGADVTVMTNNVKAGEEACQYLVDHTGGK
GDYVILNGPASSSILERVKGCKNVLSQHADIKILSDDQNAEGSRDGGLKVFQSLLTRFDKIDAVFAINDPTAIGAQLAAK
QLNRSEFIFTAVDGAPDIEKELSSGSSMIKASASQDPYVMAGQSLTMAAELLAGKKPAEATVLLDPKLITAENLKDYKGW
TAAR
>Mature_324_residues
MRGAGHQEEVSVMKTIAKLLCGAAFAAVAIAPASAKDLNKVGISVGLLGNPFFVATIKGIEDAAKKINPKVEVTSVSADY
DLNKQVSQVDSFIAAGVDVIMLNAVDAKAIAPAVKKAQAAGIIVAAFDVSAPGADVTVMTNNVKAGEEACQYLVDHTGGK
GDYVILNGPASSSILERVKGCKNVLSQHADIKILSDDQNAEGSRDGGLKVFQSLLTRFDKIDAVFAINDPTAIGAQLAAK
QLNRSEFIFTAVDGAPDIEKELSSGSSMIKASASQDPYVMAGQSLTMAAELLAGKKPAEATVLLDPKLITAENLKDYKGW
TAAR

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=305, Percent_Identity=31.1475409836066, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790526, Length=271, Percent_Identity=25.830258302583, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790674, Length=196, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789990, Length=260, Percent_Identity=28.4615384615385, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33706; Mature: 33706

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGAGHQEEVSVMKTIAKLLCGAAFAAVAIAPASAKDLNKVGISVGLLGNPFFVATIKGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCEEEEECCCCEEEEEECCH
EDAAKKINPKVEVTSVSADYDLNKQVSQVDSFIAAGVDVIMLNAVDAKAIAPAVKKAQAA
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHC
GIIVAAFDVSAPGADVTVMTNNVKAGEEACQYLVDHTGGKGDYVILNGPASSSILERVKG
EEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
CKNVLSQHADIKILSDDQNAEGSRDGGLKVFQSLLTRFDKIDAVFAINDPTAIGAQLAAK
HHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
QLNRSEFIFTAVDGAPDIEKELSSGSSMIKASASQDPYVMAGQSLTMAAELLAGKKPAEA
HCCCCEEEEEEECCCCCHHHHHCCCCCEEEECCCCCCEEEECCHHHHHHHHHCCCCCCCE
TVLLDPKLITAENLKDYKGWTAAR
EEEECCCEEECCCCHHHCCCCCCC
>Mature Secondary Structure
MRGAGHQEEVSVMKTIAKLLCGAAFAAVAIAPASAKDLNKVGISVGLLGNPFFVATIKGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCEEEEECCCCEEEEEECCH
EDAAKKINPKVEVTSVSADYDLNKQVSQVDSFIAAGVDVIMLNAVDAKAIAPAVKKAQAA
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHC
GIIVAAFDVSAPGADVTVMTNNVKAGEEACQYLVDHTGGKGDYVILNGPASSSILERVKG
EEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
CKNVLSQHADIKILSDDQNAEGSRDGGLKVFQSLLTRFDKIDAVFAINDPTAIGAQLAAK
HHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
QLNRSEFIFTAVDGAPDIEKELSSGSSMIKASASQDPYVMAGQSLTMAAELLAGKKPAEA
HCCCCEEEEEEECCCCCHHHHHCCCCCEEEECCCCCCEEEECCHHHHHHHHHCCCCCCCE
TVLLDPKLITAENLKDYKGWTAAR
EEEECCCEEECCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]