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The map label for this gene is araQ [H]

Identifier: 13473097

GI number: 13473097

Start: 2892072

End: 2892914

Strand: Reverse

Name: araQ [H]

Synonym: mll3588

Alternate gene names: 13473097

Gene position: 2892914-2892072 (Counterclockwise)

Preceding gene: 13473098

Following gene: 13473095

Centisome position: 41.12

GC content: 59.79

Gene sequence:

>843_bases
ATGAACGCCGTGGCTGCGCAACGCTGGAACTTCTGGGGCGGGATCATCACGGCACTGACGCTCGTCTGGGCCATCCTATG
GGCGTTCCCGCTCTATTGGGGTGTGATCTCATCGCTCAAGCCGGACGACGAGGTCATCCGGCCTTACATCGAACTCTGGC
CCGAGACGCCGACGCTGGAGAACTACATTAGCGCCCTGACCACCACACAGATCGGCGCCTGGTACGTCAATTCGGTGGCG
GTAGCGGTCGGCGTAACGGTCATCACCATCTTCATCTCGATGCTGTGCGGCTATGCGATCTCGCAATTGCGGTTCCCGGG
ACGCATCGCGCTATGGTGGCTGATCCTCGCCTCCTTCATGGTGCCGACTTCGGCGCTTATCATCAATCATTTCGTGCTGG
TCGCGAACCTTGGCCTGCTCAACAGCTGGGCCGGAATCATGTTGCCGCAGCTTATCCACCCCGTCATCATCATCGTGTAC
AAGCAGTTCTTCGATCAGGTCCCCAAGGACTTCCGCGAGGCCGCGGTCATGGACAATGCATCCGAGTTCGGAATCCTCTT
CAAGATCTACATGCCGATGAACTGGGGGGTGACGACGGCGCTGTCGATCGTCTGCTTCATCTGGACGTGGAATGCGTTCT
TGTGGCCGTTCCTCTCGGTGACCCGCACCGAGATGATGACGATCACCGTCGGCATCACGCAGGTCAATGATGCCTTCGGT
GTCTACTACGCGCGCCAGCTGTCGGCAGCCGTGCTGGCCGGCCTGCCGGTGGCACTAGCCTACCTCTTCTTCCAGCGCCG
GGTAACCGAAGCGATAACGCTCTCGGCAGGCATCAAGGGCTAA

Upstream 100 bases:

>100_bases
GCGGCAGGGCGGCGGCTGTCGCCGTCACCCTCTTCGTGCTCGTGGTGGTCGTCTCGGTCCTGCAATTCCAACTGCTCCGG
TTCGCCGAAAGGCGGCGCCG

Downstream 100 bases:

>100_bases
GGCGCCCGCAAGTGCACCGCAATGCCGGAGGGCACGACCTCGCTCGGCAGGTTCAGGCCCCGTCAGCGCCCGCGTGCCAG
GCCGATCCATCCGCGGCGAA

Product: sugar transporter integral membrane protein (permease)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNAVAAQRWNFWGGIITALTLVWAILWAFPLYWGVISSLKPDDEVIRPYIELWPETPTLENYISALTTTQIGAWYVNSVA
VAVGVTVITIFISMLCGYAISQLRFPGRIALWWLILASFMVPTSALIINHFVLVANLGLLNSWAGIMLPQLIHPVIIIVY
KQFFDQVPKDFREAAVMDNASEFGILFKIYMPMNWGVTTALSIVCFIWTWNAFLWPFLSVTRTEMMTITVGITQVNDAFG
VYYARQLSAAVLAGLPVALAYLFFQRRVTEAITLSAGIKG

Sequences:

>Translated_280_residues
MNAVAAQRWNFWGGIITALTLVWAILWAFPLYWGVISSLKPDDEVIRPYIELWPETPTLENYISALTTTQIGAWYVNSVA
VAVGVTVITIFISMLCGYAISQLRFPGRIALWWLILASFMVPTSALIINHFVLVANLGLLNSWAGIMLPQLIHPVIIIVY
KQFFDQVPKDFREAAVMDNASEFGILFKIYMPMNWGVTTALSIVCFIWTWNAFLWPFLSVTRTEMMTITVGITQVNDAFG
VYYARQLSAAVLAGLPVALAYLFFQRRVTEAITLSAGIKG
>Mature_280_residues
MNAVAAQRWNFWGGIITALTLVWAILWAFPLYWGVISSLKPDDEVIRPYIELWPETPTLENYISALTTTQIGAWYVNSVA
VAVGVTVITIFISMLCGYAISQLRFPGRIALWWLILASFMVPTSALIINHFVLVANLGLLNSWAGIMLPQLIHPVIIIVY
KQFFDQVPKDFREAAVMDNASEFGILFKIYMPMNWGVTTALSIVCFIWTWNAFLWPFLSVTRTEMMTITVGITQVNDAFG
VYYARQLSAAVLAGLPVALAYLFFQRRVTEAITLSAGIKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=210, Percent_Identity=31.9047619047619, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787571, Length=283, Percent_Identity=24.7349823321555, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790464, Length=215, Percent_Identity=26.046511627907, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31401; Mature: 31401

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVAAQRWNFWGGIITALTLVWAILWAFPLYWGVISSLKPDDEVIRPYIELWPETPTLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH
NYISALTTTQIGAWYVNSVAVAVGVTVITIFISMLCGYAISQLRFPGRIALWWLILASFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VPTSALIINHFVLVANLGLLNSWAGIMLPQLIHPVIIIVYKQFFDQVPKDFREAAVMDNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SEFGILFKIYMPMNWGVTTALSIVCFIWTWNAFLWPFLSVTRTEMMTITVGITQVNDAFG
HHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHH
VYYARQLSAAVLAGLPVALAYLFFQRRVTEAITLSAGIKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAVAAQRWNFWGGIITALTLVWAILWAFPLYWGVISSLKPDDEVIRPYIELWPETPTLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH
NYISALTTTQIGAWYVNSVAVAVGVTVITIFISMLCGYAISQLRFPGRIALWWLILASFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VPTSALIINHFVLVANLGLLNSWAGIMLPQLIHPVIIIVYKQFFDQVPKDFREAAVMDNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SEFGILFKIYMPMNWGVTTALSIVCFIWTWNAFLWPFLSVTRTEMMTITVGITQVNDAFG
HHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHH
VYYARQLSAAVLAGLPVALAYLFFQRRVTEAITLSAGIKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]