Click here to switch to the map view.

The map label for this gene is yddA [C]

Identifier: 13473059

GI number: 13473059

Start: 2857512

End: 2859389

Strand: Reverse

Name: yddA [C]

Synonym: mll3543

Alternate gene names: 13473059

Gene position: 2859389-2857512 (Counterclockwise)

Preceding gene: 13473060

Following gene: 13473058

Centisome position: 40.64

GC content: 64.22

Gene sequence:

>1878_bases
ATGCGGATGCCGTCATCATCCGGTCTCAGCATCGCACCTGAACGCAAGGACCCTGACATGGCTGATCAACTTGACAATCA
GGCCACCATTCAGCCGGTCGCCGTCGAGGCCAGCAGCCTGCGTGATCAGGTTGCGACGATCAGGCGGGCGCTGGTGGTGT
CGCCGGTTCGCAAATGGCTGCTGTGGACGTCGGTCGGCATCATGGCCGTCATCATCGCGACGTCGATCGGCCAGGTCCTG
CTCAACCGCTGGAACCAGCCCTTCTACGATGCGTTGGCGCGCCGCGACATGGCGGCCTTCGTGCACCAGCTCCTCGTCTT
CGCGATTATCGCCGGCGGGCTGCTGGTGCTCAACATCGGTCAGACCTGGCTCAACCAGATGATCCGGCTGAAGTTGCGCG
AGGCGCTGACGCTCGACCTGATCGACCAGTGGATGCGGCCGGCACGCGCCTTCCGGCTGGCCAATGCCGGCGCCATCGGC
GTCAACCCCGACCAGCGCATGCAGCAGGATGCGGCGCATCTCTCCGACCTGTCGACGGACCTTGGTGTCGGATTGCTGCA
GTCGCTGATCCTGCTCGTGTCCTTCGTCGGCGTGCTGTGGGAACTGTCTTCAGGCTTCGTCTTCCACATCAACGGCTGGT
CGCTGGCCATACCGGGCTACATGGTCTGGGCGGCGTTCCTCTATGCCGGGACCGCCTCCTGGCTGAGCTGGCTGGTCGGG
CGGCCGCTCATCAAGCTGAACAGCGACCGCTACACACGGGAGGCGGAGCTGCGCTCCTCGATGGTGCGCGTCAACGAGAA
TGTCGATGCCATCGCGCTGTACCATGGTGAGGCCGACGCCAAGCAGCGGCTCGAACTCGACCTCGGCACGGTGCTGGGCG
CCATGCGGCGCATCTATACCGCGCAGATCAACCTGTCGTGGGTGACCGATACCTATGGCTGGATCACTGTCGTGGCGCCG
ATCCTGGTTGCCTCGCCCGTCTATTTCTCGGGCGATATCAGCTTTGGCGGGCTGATGATGGCGGTCGGCGCCTTCAACCA
GGTCCATTCGTCGTTGCGCTGGTTCATCAACAACATCGGCAGCATCGCCGACTGGCGCGCCACGCTGATGCGCGTCGCCG
ACTTCCGCATCGCGCTCGACGAAACCGATGTGCTGCACGACACCGAAAGGCGTATCACCTTCGATCAAAATGCCAATGGC
AGCCTGACGTTCGAGAAGCTTCAGGTCGCCTCGCCGGAGGGCTGCACAAAACTCTCGGACCAGCATGTCGAAATCCGCGC
CGGCGATCGCGTGATGATCACCGGCGAACCCGGTGCCGGCAAGACGCTGTTCTTCCGCGCCATTGCCGGGCTTTGGCCCT
GGGGCAGCGGAAAGATCGGCCTGCCGGCCGGAGAAACCCTCATCTTCGTGCCACGCGTGCCGTATTTGCCGGCCGGCACG
TTGCGCGAGGTGCTCAATCACGCCAACGGGCATGCGCCCGCGAGTGACGCCGAGATTGTGGCGGTGCTGGCCGAAATTGG
CCTTCAACGGCTGTCGTTCTCGCTCGACCGCGTGGGGCGCTGGGACCATGAACTGGGCGATGACGAACAGCGCTTGCTGG
GCGTGGCCAGGCTCGCCTTGCGGCAGCCGAAATGGGTGATCATCGACGAAGCCATGGATGCGTTCGACGGTCCCTCGCTG
CGGCGGGTGCTGGCGATGCTGGAAAAGCATCTGAAGGGCGCCACGATCATCAACATCGGGCGCGGCCAGCACAATAACCA
GTTCTTTCCGCGCGGCCTGACGATCGTCAAGGATACCGGTGCCCAGCCGCTGAAACCAGCCCGCGTCAGAGCCGGCGCCA
TCGATCCGCCGCCGGTCGCCGTCCGCCGCAAGAAATAG

Upstream 100 bases:

>100_bases
CGCCGGCTCGTCAGGTGAAACCTTCGTGATCGTGCTAGAAACGCGCGCGGCGCGTCCCTCCTCGACCTATCTGTCGTGGT
GAACTCGCAACCTGCCTGAT

Downstream 100 bases:

>100_bases
GACTGCTTTTCCACATAGCCCAGCAAGCTTTATTTCGCCGCGATCGCGAAGGAAGATTTCCGCGAGAAACAAAATTTGGC
GGTGGCGATGCTTGATGCTC

Product: ExsE protein(ABC transporter, ATP-binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MRMPSSSGLSIAPERKDPDMADQLDNQATIQPVAVEASSLRDQVATIRRALVVSPVRKWLLWTSVGIMAVIIATSIGQVL
LNRWNQPFYDALARRDMAAFVHQLLVFAIIAGGLLVLNIGQTWLNQMIRLKLREALTLDLIDQWMRPARAFRLANAGAIG
VNPDQRMQQDAAHLSDLSTDLGVGLLQSLILLVSFVGVLWELSSGFVFHINGWSLAIPGYMVWAAFLYAGTASWLSWLVG
RPLIKLNSDRYTREAELRSSMVRVNENVDAIALYHGEADAKQRLELDLGTVLGAMRRIYTAQINLSWVTDTYGWITVVAP
ILVASPVYFSGDISFGGLMMAVGAFNQVHSSLRWFINNIGSIADWRATLMRVADFRIALDETDVLHDTERRITFDQNANG
SLTFEKLQVASPEGCTKLSDQHVEIRAGDRVMITGEPGAGKTLFFRAIAGLWPWGSGKIGLPAGETLIFVPRVPYLPAGT
LREVLNHANGHAPASDAEIVAVLAEIGLQRLSFSLDRVGRWDHELGDDEQRLLGVARLALRQPKWVIIDEAMDAFDGPSL
RRVLAMLEKHLKGATIINIGRGQHNNQFFPRGLTIVKDTGAQPLKPARVRAGAIDPPPVAVRRKK

Sequences:

>Translated_625_residues
MRMPSSSGLSIAPERKDPDMADQLDNQATIQPVAVEASSLRDQVATIRRALVVSPVRKWLLWTSVGIMAVIIATSIGQVL
LNRWNQPFYDALARRDMAAFVHQLLVFAIIAGGLLVLNIGQTWLNQMIRLKLREALTLDLIDQWMRPARAFRLANAGAIG
VNPDQRMQQDAAHLSDLSTDLGVGLLQSLILLVSFVGVLWELSSGFVFHINGWSLAIPGYMVWAAFLYAGTASWLSWLVG
RPLIKLNSDRYTREAELRSSMVRVNENVDAIALYHGEADAKQRLELDLGTVLGAMRRIYTAQINLSWVTDTYGWITVVAP
ILVASPVYFSGDISFGGLMMAVGAFNQVHSSLRWFINNIGSIADWRATLMRVADFRIALDETDVLHDTERRITFDQNANG
SLTFEKLQVASPEGCTKLSDQHVEIRAGDRVMITGEPGAGKTLFFRAIAGLWPWGSGKIGLPAGETLIFVPRVPYLPAGT
LREVLNHANGHAPASDAEIVAVLAEIGLQRLSFSLDRVGRWDHELGDDEQRLLGVARLALRQPKWVIIDEAMDAFDGPSL
RRVLAMLEKHLKGATIINIGRGQHNNQFFPRGLTIVKDTGAQPLKPARVRAGAIDPPPVAVRRKK
>Mature_625_residues
MRMPSSSGLSIAPERKDPDMADQLDNQATIQPVAVEASSLRDQVATIRRALVVSPVRKWLLWTSVGIMAVIIATSIGQVL
LNRWNQPFYDALARRDMAAFVHQLLVFAIIAGGLLVLNIGQTWLNQMIRLKLREALTLDLIDQWMRPARAFRLANAGAIG
VNPDQRMQQDAAHLSDLSTDLGVGLLQSLILLVSFVGVLWELSSGFVFHINGWSLAIPGYMVWAAFLYAGTASWLSWLVG
RPLIKLNSDRYTREAELRSSMVRVNENVDAIALYHGEADAKQRLELDLGTVLGAMRRIYTAQINLSWVTDTYGWITVVAP
ILVASPVYFSGDISFGGLMMAVGAFNQVHSSLRWFINNIGSIADWRATLMRVADFRIALDETDVLHDTERRITFDQNANG
SLTFEKLQVASPEGCTKLSDQHVEIRAGDRVMITGEPGAGKTLFFRAIAGLWPWGSGKIGLPAGETLIFVPRVPYLPAGT
LREVLNHANGHAPASDAEIVAVLAEIGLQRLSFSLDRVGRWDHELGDDEQRLLGVARLALRQPKWVIIDEAMDAFDGPSL
RRVLAMLEKHLKGATIINIGRGQHNNQFFPRGLTIVKDTGAQPLKPARVRAGAIDPPPVAVRRKK

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=497, Percent_Identity=23.3400402414487, Blast_Score=110, Evalue=5e-24,
Organism=Homo sapiens, GI7262393, Length=558, Percent_Identity=22.0430107526882, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI4826958, Length=544, Percent_Identity=23.5294117647059, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI9945308, Length=580, Percent_Identity=20.5172413793103, Blast_Score=91, Evalue=4e-18,
Organism=Escherichia coli, GI1787772, Length=505, Percent_Identity=27.3267326732673, Blast_Score=220, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17532411, Length=538, Percent_Identity=22.6765799256506, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17532409, Length=467, Percent_Identity=22.9122055674518, Blast_Score=102, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17564250, Length=566, Percent_Identity=24.2049469964664, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI72000520, Length=552, Percent_Identity=24.0942028985507, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17542146, Length=157, Percent_Identity=27.3885350318471, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24643394, Length=471, Percent_Identity=22.5053078556263, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24638550, Length=527, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638552, Length=527, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638554, Length=527, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638546, Length=527, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638556, Length=527, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638548, Length=527, Percent_Identity=22.5806451612903, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638558, Length=489, Percent_Identity=21.6768916155419, Blast_Score=79, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 68984; Mature: 68984

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F ; PS00636 DNAJ_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMPSSSGLSIAPERKDPDMADQLDNQATIQPVAVEASSLRDQVATIRRALVVSPVRKWL
CCCCCCCCCEECCCCCCCCHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
LWTSVGIMAVIIATSIGQVLLNRWNQPFYDALARRDMAAFVHQLLVFAIIAGGLLVLNIG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
QTWLNQMIRLKLREALTLDLIDQWMRPARAFRLANAGAIGVNPDQRMQQDAAHLSDLSTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
LGVGLLQSLILLVSFVGVLWELSSGFVFHINGWSLAIPGYMVWAAFLYAGTASWLSWLVG
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHC
RPLIKLNSDRYTREAELRSSMVRVNENVDAIALYHGEADAKQRLELDLGTVLGAMRRIYT
CCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHE
AQINLSWVTDTYGWITVVAPILVASPVYFSGDISFGGLMMAVGAFNQVHSSLRWFINNIG
EEEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
SIADWRATLMRVADFRIALDETDVLHDTERRITFDQNANGSLTFEKLQVASPEGCTKLSD
CHHHHHHHHHHHHHHEEEECCCHHHCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCC
QHVEIRAGDRVMITGEPGAGKTLFFRAIAGLWPWGSGKIGLPAGETLIFVPRVPYLPAGT
CCEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHH
LREVLNHANGHAPASDAEIVAVLAEIGLQRLSFSLDRVGRWDHELGDDEQRLLGVARLAL
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RQPKWVIIDEAMDAFDGPSLRRVLAMLEKHLKGATIINIGRGQHNNQFFPRGLTIVKDTG
CCCCEEEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCC
AQPLKPARVRAGAIDPPPVAVRRKK
CCCCCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRMPSSSGLSIAPERKDPDMADQLDNQATIQPVAVEASSLRDQVATIRRALVVSPVRKWL
CCCCCCCCCEECCCCCCCCHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
LWTSVGIMAVIIATSIGQVLLNRWNQPFYDALARRDMAAFVHQLLVFAIIAGGLLVLNIG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
QTWLNQMIRLKLREALTLDLIDQWMRPARAFRLANAGAIGVNPDQRMQQDAAHLSDLSTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
LGVGLLQSLILLVSFVGVLWELSSGFVFHINGWSLAIPGYMVWAAFLYAGTASWLSWLVG
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHC
RPLIKLNSDRYTREAELRSSMVRVNENVDAIALYHGEADAKQRLELDLGTVLGAMRRIYT
CCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHE
AQINLSWVTDTYGWITVVAPILVASPVYFSGDISFGGLMMAVGAFNQVHSSLRWFINNIG
EEEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
SIADWRATLMRVADFRIALDETDVLHDTERRITFDQNANGSLTFEKLQVASPEGCTKLSD
CHHHHHHHHHHHHHHEEEECCCHHHCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCC
QHVEIRAGDRVMITGEPGAGKTLFFRAIAGLWPWGSGKIGLPAGETLIFVPRVPYLPAGT
CCEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHH
LREVLNHANGHAPASDAEIVAVLAEIGLQRLSFSLDRVGRWDHELGDDEQRLLGVARLAL
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RQPKWVIIDEAMDAFDGPSLRRVLAMLEKHLKGATIINIGRGQHNNQFFPRGLTIVKDTG
CCCCEEEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCC
AQPLKPARVRAGAIDPPPVAVRRKK
CCCCCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]