Definition Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession NC_002678
Length 7,036,071

Click here to switch to the map view.

The map label for this gene is 13472889

Identifier: 13472889

GI number: 13472889

Start: 2678006

End: 2678545

Strand: Reverse

Name: 13472889

Synonym: mll3326

Alternate gene names: NA

Gene position: 2678545-2678006 (Counterclockwise)

Preceding gene: 13472890

Following gene: 13472888

Centisome position: 38.07

GC content: 62.04

Gene sequence:

>540_bases
ATGTCCCATTTTTCCGATATAGCGGCGGGCACTCTGTTCAGCCGCATTCTGTCCCGCGTCCAGGAGCGTCTCGGCACTGC
CGTGCTGGCCTTGGCGATCATGCTCGCCGGCGCACAGTCTGTCCTGGCGCATGAGTTCAAGGTCGGCGATATCGAGATCG
GCCATCCCTGGTCACGCGCCACGCCGGCCGGCGCCAAGGTTGCCGGCGGCTATTTAACCATTACAAACAACGGCAGCGCG
CCGGACCGGCTGCTATCGATTTCGTCCGACATCTCGGACAAGGCCGAACTGCATGAGATGGGTGTCAAGGACGGCGTCAT
GACCATGCGGCCCGTTGTCGGCGGCCTGGAGATTCCAGCCGGCGGCAAGGTCGTTTTGGGCCCCGGCAGCTATCACGTGA
TGTTCATGGATCTGAAGCAGCCACCCAAGCAAGGCGAGATGTTCGCCGCCACGCTGACCTTCGAAAAGGCAGGGACGGTG
ACGATCAAATTCGCCGTGCAGGCCATGGGCAGCGCGGCGCCTCAAGAAGACAACGACTGA

Upstream 100 bases:

>100_bases
TGAGCTTGCTTGCCCGGCGGAACCTTTCGCGGGCGCACCCATCCAACGACCAAACGGCTCGCGACCGGCGACGGCGCGAT
CATCACTTCATGGAGCAACC

Downstream 100 bases:

>100_bases
ACCGGCCATCGTACCGATCAAGATTCTAGAGGGACCATGATGAACAAGTATCTTTTGGCTGCCGGCGCGACACTGACTTT
GGGGACAAATACCGCCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSHFSDIAAGTLFSRILSRVQERLGTAVLALAIMLAGAQSVLAHEFKVGDIEIGHPWSRATPAGAKVAGGYLTITNNGSA
PDRLLSISSDISDKAELHEMGVKDGVMTMRPVVGGLEIPAGGKVVLGPGSYHVMFMDLKQPPKQGEMFAATLTFEKAGTV
TIKFAVQAMGSAAPQEDND

Sequences:

>Translated_179_residues
MSHFSDIAAGTLFSRILSRVQERLGTAVLALAIMLAGAQSVLAHEFKVGDIEIGHPWSRATPAGAKVAGGYLTITNNGSA
PDRLLSISSDISDKAELHEMGVKDGVMTMRPVVGGLEIPAGGKVVLGPGSYHVMFMDLKQPPKQGEMFAATLTFEKAGTV
TIKFAVQAMGSAAPQEDND
>Mature_178_residues
SHFSDIAAGTLFSRILSRVQERLGTAVLALAIMLAGAQSVLAHEFKVGDIEIGHPWSRATPAGAKVAGGYLTITNNGSAP
DRLLSISSDISDKAELHEMGVKDGVMTMRPVVGGLEIPAGGKVVLGPGSYHVMFMDLKQPPKQGEMFAATLTFEKAGTVT
IKFAVQAMGSAAPQEDND

Specific function: Unknown

COG id: COG2847

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007410 [H]

Pfam domain/function: PF04314 DUF461 [H]

EC number: NA

Molecular weight: Translated: 18766; Mature: 18635

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHFSDIAAGTLFSRILSRVQERLGTAVLALAIMLAGAQSVLAHEFKVGDIEIGHPWSRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEECCEEEECCCCCCC
TPAGAKVAGGYLTITNNGSAPDRLLSISSDISDKAELHEMGVKDGVMTMRPVVGGLEIPA
CCCCCEEECCEEEEECCCCCHHHHEECCCCCCHHHHHHHCCCCCCCEEHHHCCCCEECCC
GGKVVLGPGSYHVMFMDLKQPPKQGEMFAATLTFEKAGTVTIKFAVQAMGSAAPQEDND
CCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEHHCCCCCCCCCC
>Mature Secondary Structure 
SHFSDIAAGTLFSRILSRVQERLGTAVLALAIMLAGAQSVLAHEFKVGDIEIGHPWSRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEECCEEEECCCCCCC
TPAGAKVAGGYLTITNNGSAPDRLLSISSDISDKAELHEMGVKDGVMTMRPVVGGLEIPA
CCCCCEEECCEEEEECCCCCHHHHEECCCCCCHHHHHHHCCCCCCCEEHHHCCCCEECCC
GGKVVLGPGSYHVMFMDLKQPPKQGEMFAATLTFEKAGTVTIKFAVQAMGSAAPQEDND
CCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA